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Virus Variation Resource - improved response to emergent viral outbreaks.
Hatcher EL, Zhdanov SA, Bao Y, Blinkova O, Nawrocki EP, Ostapchuck Y, Schäffer AA, Brister JR. Hatcher EL, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2017 Jan 4;45(D1):D482-D490. doi: 10.1093/nar/gkw1065. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899678 Free PMC article.
NCBI prokaryotic genome annotation pipeline.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. Tatusova T, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24. Nucleic Acids Res. 2016. PMID: 27342282 Free PMC article.
VADR: validation and annotation of virus sequence submissions to GenBank.
Schäffer AA, Hatcher EL, Yankie L, Shonkwiler L, Brister JR, Karsch-Mizrachi I, Nawrocki EP. Schäffer AA, et al. Among authors: nawrocki ep. BMC Bioinformatics. 2020 May 24;21(1):211. doi: 10.1186/s12859-020-3537-3. BMC Bioinformatics. 2020. PMID: 32448124 Free PMC article.
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2021 Jan 8;49(D1):D192-D200. doi: 10.1093/nar/gkaa1047. Nucleic Acids Res. 2021. PMID: 33211869 Free PMC article.
Influenza sequence validation and annotation using VADR.
Calhoun VC, Hatcher EL, Yankie L, Nawrocki EP. Calhoun VC, et al. Among authors: nawrocki ep. bioRxiv [Preprint]. 2024 Mar 25:2024.03.21.585980. doi: 10.1101/2024.03.21.585980. bioRxiv. 2024. PMID: 38712272 Free PMC article. Preprint.
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2018 Jan 4;46(D1):D335-D342. doi: 10.1093/nar/gkx1038. Nucleic Acids Res. 2018. PMID: 29112718 Free PMC article.
Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.
Underwood BA, Yankie L, Nawrocki EP, Palanigobu V, Gotvyanskyy S, Calhoun VC, Kornbluh M, Smith TG, Fleischmann L, Sinyakov D, Bollin CJ, Karsch-Mizrachi I. Underwood BA, et al. Among authors: nawrocki ep. Database (Oxford). 2022 Mar 1;2022:baac006. doi: 10.1093/database/baac006. Database (Oxford). 2022. PMID: 35230423 Free PMC article.
Group I introns are widespread in archaea.
Nawrocki EP, Jones TA, Eddy SR. Nawrocki EP, et al. Nucleic Acids Res. 2018 Sep 6;46(15):7970-7976. doi: 10.1093/nar/gky414. Nucleic Acids Res. 2018. PMID: 29788499 Free PMC article.
35 results