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GlyTouCan: an accessible glycan structure repository.
Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF. Tiemeyer M, et al. Among authors: narimatsu h. Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066. Glycobiology. 2017. PMID: 28922742 Free PMC article.
The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.
Aoki-Kinoshita KF, Sawaki H, An HJ, Cho JW, Hsu D, Kato M, Kawano S, Kawasaki T, Khoo KH, Kim J, Kim JD, Li X, Lütteke T, Okuda S, Packer NH, Paulson JC, Raman R, Ranzinger R, Shen H, Shikanai T, Yamada I, Yang P, Yamaguchi Y, Ying W, Yoo JS, Zhang Y, Narimatsu H. Aoki-Kinoshita KF, et al. Among authors: narimatsu h. Glycobiology. 2013 Feb;23(2):144-6. doi: 10.1093/glycob/cws167. Glycobiology. 2013. PMID: 23271684 Free PMC article. No abstract available.
GlyTouCan 1.0--The international glycan structure repository.
Aoki-Kinoshita K, Agravat S, Aoki NP, Arpinar S, Cummings RD, Fujita A, Fujita N, Hart GM, Haslam SM, Kawasaki T, Matsubara M, Moreman KW, Okuda S, Pierce M, Ranzinger R, Shikanai T, Shinmachi D, Solovieva E, Suzuki Y, Tsuchiya S, Yamada I, York WS, Zaia J, Narimatsu H. Aoki-Kinoshita K, et al. Among authors: narimatsu h. Nucleic Acids Res. 2016 Jan 4;44(D1):D1237-42. doi: 10.1093/nar/gkv1041. Epub 2015 Oct 17. Nucleic Acids Res. 2016. PMID: 26476458 Free PMC article.
Symbol Nomenclature for Graphical Representations of Glycans.
Varki A, Cummings RD, Aebi M, Packer NH, Seeberger PH, Esko JD, Stanley P, Hart G, Darvill A, Kinoshita T, Prestegard JJ, Schnaar RL, Freeze HH, Marth JD, Bertozzi CR, Etzler ME, Frank M, Vliegenthart JF, Lütteke T, Perez S, Bolton E, Rudd P, Paulson J, Kanehisa M, Toukach P, Aoki-Kinoshita KF, Dell A, Narimatsu H, York W, Taniguchi N, Kornfeld S. Varki A, et al. Among authors: narimatsu h. Glycobiology. 2015 Dec;25(12):1323-4. doi: 10.1093/glycob/cwv091. Glycobiology. 2015. PMID: 26543186 Free PMC article. No abstract available.
Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans.
Tsuchiya S, Aoki NP, Shinmachi D, Matsubara M, Yamada I, Aoki-Kinoshita KF, Narimatsu H. Tsuchiya S, et al. Among authors: narimatsu h. Carbohydr Res. 2017 Jun 5;445:104-116. doi: 10.1016/j.carres.2017.04.015. Epub 2017 Apr 19. Carbohydr Res. 2017. PMID: 28525772 Free article.
WURCS: the Web3 unique representation of carbohydrate structures.
Tanaka K, Aoki-Kinoshita KF, Kotera M, Sawaki H, Tsuchiya S, Fujita N, Shikanai T, Kato M, Kawano S, Yamada I, Narimatsu H. Tanaka K, et al. Among authors: narimatsu h. J Chem Inf Model. 2014 Jun 23;54(6):1558-66. doi: 10.1021/ci400571e. Epub 2014 Jun 4. J Chem Inf Model. 2014. PMID: 24897372
GlycoRDF: an ontology to standardize glycomics data in RDF.
Ranzinger R, Aoki-Kinoshita KF, Campbell MP, Kawano S, Lütteke T, Okuda S, Shinmachi D, Shikanai T, Sawaki H, Toukach P, Matsubara M, Yamada I, Narimatsu H. Ranzinger R, et al. Among authors: narimatsu h. Bioinformatics. 2015 Mar 15;31(6):919-25. doi: 10.1093/bioinformatics/btu732. Epub 2014 Nov 11. Bioinformatics. 2015. PMID: 25388145 Free PMC article.
WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures.
Matsubara M, Aoki-Kinoshita KF, Aoki NP, Yamada I, Narimatsu H. Matsubara M, et al. Among authors: narimatsu h. J Chem Inf Model. 2017 Apr 24;57(4):632-637. doi: 10.1021/acs.jcim.6b00650. Epub 2017 Mar 22. J Chem Inf Model. 2017. PMID: 28263066 Free article.
The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences.
Yamada I, Shiota M, Shinmachi D, Ono T, Tsuchiya S, Hosoda M, Fujita A, Aoki NP, Watanabe Y, Fujita N, Angata K, Kaji H, Narimatsu H, Okuda S, Aoki-Kinoshita KF. Yamada I, et al. Among authors: narimatsu h. Nat Methods. 2020 Jul;17(7):649-650. doi: 10.1038/s41592-020-0879-8. Nat Methods. 2020. PMID: 32572234 No abstract available.
556 results