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qPortal: A platform for data-driven biomedical research.
Mohr C, Friedrich A, Wojnar D, Kenar E, Polatkan AC, Codrea MC, Czemmel S, Kohlbacher O, Nahnsen S. Mohr C, et al. Among authors: nahnsen s. PLoS One. 2018 Jan 19;13(1):e0191603. doi: 10.1371/journal.pone.0191603. eCollection 2018. PLoS One. 2018. PMID: 29352322 Free PMC article.
In silico design of targeted SRM-based experiments.
Nahnsen S, Kohlbacher O. Nahnsen S, et al. BMC Bioinformatics. 2012;13 Suppl 16(Suppl 16):S8. doi: 10.1186/1471-2105-13-S16-S8. Epub 2012 Nov 5. BMC Bioinformatics. 2012. PMID: 23176520 Free PMC article.
Tools for label-free peptide quantification.
Nahnsen S, Bielow C, Reinert K, Kohlbacher O. Nahnsen S, et al. Mol Cell Proteomics. 2013 Mar;12(3):549-56. doi: 10.1074/mcp.R112.025163. Epub 2012 Dec 17. Mol Cell Proteomics. 2013. PMID: 23250051 Free PMC article. Review.
An automated pipeline for high-throughput label-free quantitative proteomics.
Weisser H, Nahnsen S, Grossmann J, Nilse L, Quandt A, Brauer H, Sturm M, Kenar E, Kohlbacher O, Aebersold R, Malmström L. Weisser H, et al. Among authors: nahnsen s. J Proteome Res. 2013 Apr 5;12(4):1628-44. doi: 10.1021/pr300992u. Epub 2013 Feb 22. J Proteome Res. 2013. PMID: 23391308
qcML: an exchange format for quality control metrics from mass spectrometry experiments.
Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaíno JA, Hermjakob H, Kohlbacher O, Martens L. Walzer M, et al. Among authors: nahnsen s. Mol Cell Proteomics. 2014 Aug;13(8):1905-13. doi: 10.1074/mcp.M113.035907. Epub 2014 Apr 23. Mol Cell Proteomics. 2014. PMID: 24760958 Free PMC article.
Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient.
Löffler MW, Chandran PA, Laske K, Schroeder C, Bonzheim I, Walzer M, Hilke FJ, Trautwein N, Kowalewski DJ, Schuster H, Günder M, Carcamo Yañez VA, Mohr C, Sturm M, Nguyen HP, Riess O, Bauer P, Nahnsen S, Nadalin S, Zieker D, Glatzle J, Thiel K, Schneiderhan-Marra N, Clasen S, Bösmüller H, Fend F, Kohlbacher O, Gouttefangeas C, Stevanović S, Königsrainer A, Rammensee HG. Löffler MW, et al. Among authors: nahnsen s. J Hepatol. 2016 Oct;65(4):849-855. doi: 10.1016/j.jhep.2016.06.027. Epub 2016 Jul 7. J Hepatol. 2016. PMID: 27397612 Free PMC article.
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