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Protocol for identifying differentially expressed genes using the RumBall RNA-seq analysis platform.
STAR Protoc. 2024 Mar 15;5(1):102926. doi: 10.1016/j.xpro.2024.102926. Epub 2024 Mar 10.
STAR Protoc. 2024.
PMID: 38461412
Free PMC article.
Modeling embryo-endometrial interface recapitulating human embryo implantation.
Shibata S, Endo S, Nagai LAE, H Kobayashi E, Oike A, Kobayashi N, Kitamura A, Hori T, Nashimoto Y, Nakato R, Hamada H, Kaji H, Kikutake C, Suyama M, Saito M, Yaegashi N, Okae H, Arima T.
Shibata S, et al. Among authors: nagai lae.
Sci Adv. 2024 Feb 23;10(8):eadi4819. doi: 10.1126/sciadv.adi4819. Epub 2024 Feb 23.
Sci Adv. 2024.
PMID: 38394208
Free PMC article.
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FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters.
Li M, Nishimura T, Takeuchi Y, Hongu T, Wang Y, Shiokawa D, Wang K, Hirose H, Sasahara A, Yano M, Ishikawa S, Inokuchi M, Ota T, Tanabe M, Tada KI, Akiyama T, Cheng X, Liu CC, Yamashita T, Sugano S, Uchida Y, Chiba T, Asahara H, Nakagawa M, Sato S, Miyagi Y, Shimamura T, Nagai LAE, Kanai A, Katoh M, Nomura S, Nakato R, Suzuki Y, Tojo A, Voon DC, Ogawa S, Okamoto K, Foukakis T, Gotoh N.
Li M, et al. Among authors: nagai lae.
J Clin Invest. 2023 Nov 15;133(22):e166666. doi: 10.1172/JCI166666.
J Clin Invest. 2023.
PMID: 37966117
Free PMC article.
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Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors.
Nakato R, Sakata T, Wang J, Nagai LAE, Nagaoka Y, Oba GM, Bando M, Shirahige K.
Nakato R, et al. Among authors: nagai lae.
Nat Commun. 2023 Sep 19;14(1):5647. doi: 10.1038/s41467-023-41316-4.
Nat Commun. 2023.
PMID: 37726281
Free PMC article.
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Nutrient-driven dedifferentiation of enteroendocrine cells promotes adaptive intestinal growth in Drosophila.
Nagai H, Nagai LAE, Tasaki S, Nakato R, Umetsu D, Kuranaga E, Miura M, Nakajima Y.
Nagai H, et al. Among authors: nagai lae.
Dev Cell. 2023 Sep 25;58(18):1764-1781.e10. doi: 10.1016/j.devcel.2023.08.022. Epub 2023 Sep 8.
Dev Cell. 2023.
PMID: 37689060
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Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma.
Nagai LAE, Park SJ, Nakai K.
Nagai LAE, et al.
BMC Med Genomics. 2019 Mar 20;11(Suppl 7):127. doi: 10.1186/s12920-018-0437-8.
BMC Med Genomics. 2019.
PMID: 30894186
Free PMC article.
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Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species.
Wei L, Luan S, Nagai LAE, Su R, Zou Q.
Wei L, et al. Among authors: nagai lae.
Bioinformatics. 2019 Apr 15;35(8):1326-1333. doi: 10.1093/bioinformatics/bty824.
Bioinformatics. 2019.
PMID: 30239627
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