Naarmann-de Vries IS - Search Results

1

Improved nanopore direct RNA sequencing of cardiac myocyte samples by selective mt-RNA depletion.

Naarmann-de Vries IS, Eschenbach J, Dieterich C. Naarmann-de Vries IS, et al. J Mol Cell Cardiol. 2022 Feb;163:175-186. doi: 10.1016/j.yjmcc.2021.10.010. Epub 2021 Nov 3. J Mol Cell Cardiol. 2022. PMID: 34742715 Free article.

2

On the optimal design of metabolic RNA labeling experiments.

Uvarovskii A, Naarmann-de Vries IS, Dieterich C. Uvarovskii A, et al. PLoS Comput Biol. 2019 Aug 7;15(8):e1007252. doi: 10.1371/journal.pcbi.1007252. eCollection 2019 Aug. PLoS Comput Biol. 2019. PMID: 31390362 Free PMC article.

3

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover.

Boileau E, Altmüller J, Naarmann-de Vries IS, Dieterich C. Boileau E, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab219. doi: 10.1093/bib/bbab219. Brief Bioinform. 2021. PMID: 34228787 Free PMC article.

4

RNA modification mapping with JACUSA2.

Piechotta M, Naarmann-de Vries IS, Wang Q, Altmüller J, Dieterich C. Piechotta M, et al. Among authors: naarmann de vries is. Genome Biol. 2022 May 16;23(1):115. doi: 10.1186/s13059-022-02676-0. Genome Biol. 2022. PMID: 35578346 Free PMC article.

5

Targeted Analysis of circRNA Expression in Patient Samples by Lexo-circSeq.

Naarmann-de Vries IS, Eschenbach J, Schudy S, Meder B, Dieterich C. Naarmann-de Vries IS, et al. Front Mol Biosci. 2022 Jun 8;9:875805. doi: 10.3389/fmolb.2022.875805. eCollection 2022. Front Mol Biosci. 2022. PMID: 35755822 Free PMC article.

6

Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI.

Boileau E, Li X, Naarmann-de Vries IS, Becker C, Casper R, Altmüller J, Leuschner F, Dieterich C. Boileau E, et al. Among authors: naarmann de vries is. Front Genet. 2022 Jul 22;13:912572. doi: 10.3389/fgene.2022.912572. eCollection 2022. Front Genet. 2022. PMID: 35937994 Free PMC article.

7

Identification of RNA-binding Proteins in Macrophages by Interactome Capture.

Liepelt A, Naarmann-de Vries IS, Simons N, Eichelbaum K, Föhr S, Archer SK, Castello A, Usadel B, Krijgsveld J, Preiss T, Marx G, Hentze MW, Ostareck DH, Ostareck-Lederer A. Liepelt A, et al. Mol Cell Proteomics. 2016 Aug;15(8):2699-714. doi: 10.1074/mcp.M115.056564. Epub 2016 Jun 8. Mol Cell Proteomics. 2016. PMID: 27281784 Free PMC article.

8

Identification of DEAD-box RNA helicase 6 (DDX6) as a cellular modulator of vascular endothelial growth factor expression under hypoxia.

de Vries S, Naarmann-de Vries IS, Urlaub H, Lue H, Bernhagen J, Ostareck DH, Ostareck-Lederer A. de Vries S, et al. J Biol Chem. 2013 Feb 22;288(8):5815-27. doi: 10.1074/jbc.M112.420711. Epub 2013 Jan 4. J Biol Chem. 2013. PMID: 23293030 Free PMC article.

9

Caspase-3 cleaves hnRNP K in erythroid differentiation.

Naarmann-de Vries IS, Urlaub H, Ostareck DH, Ostareck-Lederer A. Naarmann-de Vries IS, et al. Cell Death Dis. 2013 Mar 21;4(3):e548. doi: 10.1038/cddis.2013.75. Cell Death Dis. 2013. PMID: 23519117 Free PMC article.

10

DDX6 and its orthologs as modulators of cellular and viral RNA expression.

Ostareck DH, Naarmann-de Vries IS, Ostareck-Lederer A. Ostareck DH, et al. Wiley Interdiscip Rev RNA. 2014 Sep-Oct;5(5):659-78. doi: 10.1002/wrna.1237. Epub 2014 Apr 30. Wiley Interdiscip Rev RNA. 2014. PMID: 24788243 Review.

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