Muntoni AP - Search Results

1

Nonconvex image reconstruction via expectation propagation.

Muntoni AP, Rojas RDH, Braunstein A, Pagnani A, Pérez Castillo I. Muntoni AP, et al. Phys Rev E. 2019 Sep;100(3-1):032134. doi: 10.1103/PhysRevE.100.032134. Phys Rev E. 2019. PMID: 31639925

2

An analytic approximation of the feasible space of metabolic networks.

Braunstein A, Muntoni AP, Pagnani A. Braunstein A, et al. Among authors: muntoni ap. Nat Commun. 2017 Apr 6;8:14915. doi: 10.1038/ncomms14915. Nat Commun. 2017. PMID: 28382977 Free PMC article.

3

Network reconstruction from infection cascades.

Braunstein A, Ingrosso A, Muntoni AP. Braunstein A, et al. Among authors: muntoni ap. J R Soc Interface. 2019 Feb 28;16(151):20180844. doi: 10.1098/rsif.2018.0844. J R Soc Interface. 2019. PMID: 30958195 Free PMC article.

4

Aligning biological sequences by exploiting residue conservation and coevolution.

Muntoni AP, Pagnani A, Weigt M, Zamponi F. Muntoni AP, et al. Phys Rev E. 2020 Dec;102(6-1):062409. doi: 10.1103/PhysRevE.102.062409. Phys Rev E. 2020. PMID: 33465950

5

Epidemic mitigation by statistical inference from contact tracing data.

Baker A, Biazzo I, Braunstein A, Catania G, Dall'Asta L, Ingrosso A, Krzakala F, Mazza F, Mézard M, Muntoni AP, Refinetti M, Sarao Mannelli S, Zdeborová L. Baker A, et al. Among authors: muntoni ap. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2106548118. doi: 10.1073/pnas.2106548118. Proc Natl Acad Sci U S A. 2021. PMID: 34312253 Free PMC article.

6

Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families.

Barrat-Charlaix P, Muntoni AP, Shimagaki K, Weigt M, Zamponi F. Barrat-Charlaix P, et al. Among authors: muntoni ap. Phys Rev E. 2021 Aug;104(2-1):024407. doi: 10.1103/PhysRevE.104.024407. Phys Rev E. 2021. PMID: 34525554

7

adabmDCA: adaptive Boltzmann machine learning for biological sequences.

Muntoni AP, Pagnani A, Weigt M, Zamponi F. Muntoni AP, et al. BMC Bioinformatics. 2021 Oct 29;22(1):528. doi: 10.1186/s12859-021-04441-9. BMC Bioinformatics. 2021. PMID: 34715775 Free PMC article.

8

Relationship between fitness and heterogeneity in exponentially growing microbial populations.

Muntoni AP, Braunstein A, Pagnani A, De Martino D, De Martino A. Muntoni AP, et al. Biophys J. 2022 May 17;121(10):1919-1930. doi: 10.1016/j.bpj.2022.04.012. Epub 2022 Apr 14. Biophys J. 2022. PMID: 35422414 Free PMC article.

9

Inference in conditioned dynamics through causality restoration.

Braunstein A, Catania G, Dall'Asta L, Mariani M, Muntoni AP. Braunstein A, et al. Among authors: muntoni ap. Sci Rep. 2023 May 5;13(1):7350. doi: 10.1038/s41598-023-33770-3. Sci Rep. 2023. PMID: 37147382 Free PMC article.

10

DCAlign v1.0: aligning biological sequences using co-evolution models and informed priors.

Muntoni AP, Pagnani A. Muntoni AP, et al. Bioinformatics. 2023 Sep 2;39(9):btad537. doi: 10.1093/bioinformatics/btad537. Bioinformatics. 2023. PMID: 37647658 Free PMC article.

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