Mukherjee N - Search Results

1

Global target mRNA specification and regulation by the RNA-binding protein ZFP36.

Mukherjee N, Jacobs NC, Hafner M, Kennington EA, Nusbaum JD, Tuschl T, Blackshear PJ, Ohler U. Mukherjee N, et al. Genome Biol. 2014 Jan 8;15(1):R12. doi: 10.1186/gb-2014-15-1-r12. Genome Biol. 2014. PMID: 24401661 Free PMC article.

2

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD. Mukherjee N, et al. Mol Cell. 2011 Aug 5;43(3):327-39. doi: 10.1016/j.molcel.2011.06.007. Epub 2011 Jun 30. Mol Cell. 2011. PMID: 21723170 Free PMC article.

3

FMRP targets distinct mRNA sequence elements to regulate protein expression.

Ascano M Jr, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T. Ascano M Jr, et al. Among authors: mukherjee n. Nature. 2012 Dec 20;492(7429):382-6. doi: 10.1038/nature11737. Epub 2012 Dec 12. Nature. 2012. PMID: 23235829 Free PMC article.

4

Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets.

Farazi TA, Leonhardt CS, Mukherjee N, Mihailovic A, Li S, Max KE, Meyer C, Yamaji M, Cekan P, Jacobs NC, Gerstberger S, Bognanni C, Larsson E, Ohler U, Tuschl T. Farazi TA, et al. Among authors: mukherjee n. RNA. 2014 Jul;20(7):1090-102. doi: 10.1261/rna.045005.114. Epub 2014 May 23. RNA. 2014. PMID: 24860013 Free PMC article.

5

SSMART: sequence-structure motif identification for RNA-binding proteins.

Munteanu A, Mukherjee N, Ohler U. Munteanu A, et al. Among authors: mukherjee n. Bioinformatics. 2018 Dec 1;34(23):3990-3998. doi: 10.1093/bioinformatics/bty404. Bioinformatics. 2018. PMID: 29893814 Free PMC article.

6

Identifying RBP Targets with RIP-seq.

Wessels HH, Hirsekorn A, Ohler U, Mukherjee N. Wessels HH, et al. Among authors: mukherjee n. Methods Mol Biol. 2016;1358:141-52. doi: 10.1007/978-1-4939-3067-8_9. Methods Mol Biol. 2016. PMID: 26463382

7

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.

Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U. Corcoran DL, et al. Among authors: mukherjee n. Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79. Genome Biol. 2011. PMID: 21851591 Free PMC article.

8

MicroRNA target site identification by integrating sequence and binding information.

Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U. Majoros WH, et al. Among authors: mukherjee n. Nat Methods. 2013 Jul;10(7):630-3. doi: 10.1038/nmeth.2489. Epub 2013 May 26. Nat Methods. 2013. PMID: 23708386 Free PMC article.

9

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U. Li S, et al. Among authors: mukherjee n. Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1. Genome Res. 2013. PMID: 23816784 Free PMC article.

10

Deciphering human ribonucleoprotein regulatory networks.

Mukherjee N, Wessels HH, Lebedeva S, Sajek M, Ghanbari M, Garzia A, Munteanu A, Yusuf D, Farazi T, Hoell JI, Akat KM, Akalin A, Tuschl T, Ohler U. Mukherjee N, et al. Nucleic Acids Res. 2019 Jan 25;47(2):570-581. doi: 10.1093/nar/gky1185. Nucleic Acids Res. 2019. PMID: 30517751 Free PMC article.

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