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Low-resolution description of the conformational space for intrinsically disordered proteins.
Sci Rep. 2022 Nov 9;12(1):19057. doi: 10.1038/s41598-022-21648-9.
Sci Rep. 2022.
PMID: 36352011
Free PMC article.
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach.
Malliavin TE, Mucherino A, Lavor C, Liberti L.
Malliavin TE, et al. Among authors: mucherino a.
J Chem Inf Model. 2019 Oct 28;59(10):4486-4503. doi: 10.1021/acs.jcim.9b00215. Epub 2019 Sep 6.
J Chem Inf Model. 2019.
PMID: 31442036
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An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
Cassioli A, Bardiaux B, Bouvier G, Mucherino A, Alves R, Liberti L, Nilges M, Lavor C, Malliavin TE.
Cassioli A, et al. Among authors: mucherino a.
BMC Bioinformatics. 2015 Jan 28;16:23. doi: 10.1186/s12859-015-0451-1.
BMC Bioinformatics. 2015.
PMID: 25627244
Free PMC article.
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Exploiting symmetry properties of the discretizable molecular distance geometry problem.
Mucherino A, Lavor C, Liberti L.
Mucherino A, et al.
J Bioinform Comput Biol. 2012 Jun;10(3):1242009. doi: 10.1142/S0219720012420097.
J Bioinform Comput Biol. 2012.
PMID: 22809385
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Understanding the role of the topology in protein folding by computational inverse folding experiments.
Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G.
Mucherino A, et al.
Comput Biol Chem. 2008 Aug;32(4):233-9. doi: 10.1016/j.compbiolchem.2008.03.015. Epub 2008 Apr 8.
Comput Biol Chem. 2008.
PMID: 18479970
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