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Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M. Beier S, et al. Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44. Sci Data. 2017. PMID: 28448065 Free PMC article.
Structural and functional characterization of a winter malting barley.
Muñoz-Amatriaín M, Cistué L, Xiong Y, Bilgic H, Budde AD, Schmitt MR, Smith KP, Hayes PM, Muehlbauer GJ. Muñoz-Amatriaín M, et al. Theor Appl Genet. 2010 Mar;120(5):971-84. doi: 10.1007/s00122-009-1225-9. Epub 2009 Dec 4. Theor Appl Genet. 2010. PMID: 19960335
Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.
Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N. Muñoz-Amatriaín M, et al. Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58. Genome Biol. 2013. PMID: 23758725 Free PMC article.
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R. Mascher M, et al. Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10. Plant J. 2013. PMID: 23998490 Free PMC article.
Barley genetic variation: implications for crop improvement.
Muñoz-Amatriaín M, Cuesta-Marcos A, Hayes PM, Muehlbauer GJ. Muñoz-Amatriaín M, et al. Brief Funct Genomics. 2014 Jul;13(4):341-50. doi: 10.1093/bfgp/elu006. Epub 2014 Mar 22. Brief Funct Genomics. 2014. PMID: 24658880
Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ. Muñoz-Amatriaín M, et al. Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21. Plant J. 2015. PMID: 26252423 Free PMC article.
38 results