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Meta-aligner: long-read alignment based on genome statistics.
Nashta-Ali D, Aliyari A, Ahmadian Moghadam A, Edrisi MA, Motahari SA, Hossein Khalaj B. Nashta-Ali D, et al. Among authors: motahari sa. BMC Bioinformatics. 2017 Feb 23;18(1):126. doi: 10.1186/s12859-017-1518-y. BMC Bioinformatics. 2017. PMID: 28231760 Free PMC article.
Breaking Lander-Waterman's Coverage Bound.
Nashta-Ali D, Motahari SA, Hosseinkhalaj B. Nashta-Ali D, et al. Among authors: motahari sa. PLoS One. 2016 Nov 2;11(11):e0164888. doi: 10.1371/journal.pone.0164888. eCollection 2016. PLoS One. 2016. PMID: 27806058 Free PMC article.
IMOS: improved Meta-aligner and Minimap2 On Spark.
Hadadian Nejad Yousefi M, Goudarzi M, Motahari SA. Hadadian Nejad Yousefi M, et al. Among authors: motahari sa. BMC Bioinformatics. 2019 Jan 24;20(1):51. doi: 10.1186/s12859-018-2592-5. BMC Bioinformatics. 2019. PMID: 30678641 Free PMC article.
Automated analysis of karyotype images.
Khazaei E, Emrany A, Tavassolipour M, Mahjoubi F, Ebrahimi A, Motahari SA. Khazaei E, et al. Among authors: motahari sa. J Bioinform Comput Biol. 2022 Jun;20(3):2250011. doi: 10.1142/S0219720022500111. Epub 2022 Jul 7. J Bioinform Comput Biol. 2022. PMID: 35802463
Statistical Association Mapping of Population-Structured Genetic Data.
Najafi A, Janghorbani S, Motahari SA, Fatemizadeh E. Najafi A, et al. Among authors: motahari sa. IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):638-649. doi: 10.1109/TCBB.2017.2786239. Epub 2017 Dec 22. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29990264