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Validating Amino Acid Variants in Proteogenomics Using Sequence Coverage by Multiple Reads.
Levitsky LI, Kuznetsova KG, Kliuchnikova AA, Ilina IY, Goncharov AO, Lobas AA, Ivanov MV, Lazarev VN, Ziganshin RH, Gorshkov MV, Moshkovskii SA. Levitsky LI, et al. Among authors: moshkovskii sa. J Proteome Res. 2022 Jun 3;21(6):1438-1448. doi: 10.1021/acs.jproteome.2c00033. Epub 2022 May 10. J Proteome Res. 2022. PMID: 35536917
Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells.
Zgoda VG, Kopylov AT, Tikhonova OV, Moisa AA, Pyndyk NV, Farafonova TE, Novikova SE, Lisitsa AV, Ponomarenko EA, Poverennaya EV, Radko SP, Khmeleva SA, Kurbatov LK, Filimonov AD, Bogolyubova NA, Ilgisonis EV, Chernobrovkin AL, Ivanov AS, Medvedev AE, Mezentsev YV, Moshkovskii SA, Naryzhny SN, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Govorun VM, Archakov AI. Zgoda VG, et al. Among authors: moshkovskii sa. J Proteome Res. 2013 Jan 4;12(1):123-34. doi: 10.1021/pr300821n. Epub 2012 Dec 20. J Proteome Res. 2013. PMID: 23256950
Chromosome 18 transcriptoproteome of liver tissue and HepG2 cells and targeted proteome mapping in depleted plasma: update 2013.
Ponomarenko EA, Kopylov AT, Lisitsa AV, Radko SP, Kiseleva YY, Kurbatov LK, Ptitsyn KG, Tikhonova OV, Moisa AA, Novikova SE, Poverennaya EV, Ilgisonis EV, Filimonov AD, Bogolubova NA, Averchuk VV, Karalkin PA, Vakhrushev IV, Yarygin KN, Moshkovskii SA, Zgoda VG, Sokolov AS, Mazur AM, Prokhortchouck EB, Skryabin KG, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Gorbachev AY, Govorun VM, Archakov AI. Ponomarenko EA, et al. Among authors: moshkovskii sa. J Proteome Res. 2014 Jan 3;13(1):183-90. doi: 10.1021/pr400883x. Epub 2013 Dec 13. J Proteome Res. 2014. PMID: 24328317
Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics.
Chernobrovkin AL, Kopylov AT, Zgoda VG, Moysa AA, Pyatnitskiy MA, Kuznetsova KG, Ilina IY, Karpova MA, Karpov DS, Veselovsky AV, Ivanov MV, Gorshkov MV, Archakov AI, Moshkovskii SA. Chernobrovkin AL, et al. Among authors: moshkovskii sa. J Proteomics. 2015 Apr 29;120:169-78. doi: 10.1016/j.jprot.2015.03.003. Epub 2015 Mar 14. J Proteomics. 2015. PMID: 25779464
Human aqueous humor proteome in cataract, glaucoma, and pseudoexfoliation syndrome.
Kliuchnikova AA, Samokhina NI, Ilina IY, Karpov DS, Pyatnitskiy MA, Kuznetsova KG, Toropygin IY, Kochergin SA, Alekseev IB, Zgoda VG, Archakov AI, Moshkovskii SA. Kliuchnikova AA, et al. Among authors: moshkovskii sa. Proteomics. 2016 Jul;16(13):1938-46. doi: 10.1002/pmic.201500423. Proteomics. 2016. PMID: 27193151
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