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An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehma… See abstract for full author list ➔ Jiang Y, et al. Among authors: moreau y. Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Genome Biol. 2016. PMID: 27604469 Free PMC article.
Kernel-based data fusion for gene prioritization.
De Bie T, Tranchevent LC, van Oeffelen LM, Moreau Y. De Bie T, et al. Among authors: moreau y. Bioinformatics. 2007 Jul 1;23(13):i125-32. doi: 10.1093/bioinformatics/btm187. Bioinformatics. 2007. PMID: 17646288
Using ribosomal protein genes as reference: a tale of caution.
Thorrez L, Van Deun K, Tranchevent LC, Van Lommel L, Engelen K, Marchal K, Moreau Y, Van Mechelen I, Schuit F. Thorrez L, et al. Among authors: moreau y. PLoS One. 2008 Mar 26;3(3):e1854. doi: 10.1371/journal.pone.0001854. PLoS One. 2008. PMID: 18365009 Free PMC article.
ENDEAVOUR update: a web resource for gene prioritization in multiple species.
Tranchevent LC, Barriot R, Yu S, Van Vooren S, Van Loo P, Coessens B, De Moor B, Aerts S, Moreau Y. Tranchevent LC, et al. Among authors: moreau y. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W377-84. doi: 10.1093/nar/gkn325. Epub 2008 May 28. Nucleic Acids Res. 2008. PMID: 18508807 Free PMC article.
Integrating computational biology and forward genetics in Drosophila.
Aerts S, Vilain S, Hu S, Tranchevent LC, Barriot R, Yan J, Moreau Y, Hassan BA, Quan XJ. Aerts S, et al. Among authors: moreau y. PLoS Genet. 2009 Jan;5(1):e1000351. doi: 10.1371/journal.pgen.1000351. Epub 2009 Jan 23. PLoS Genet. 2009. PMID: 19165344 Free PMC article.
243 results