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Independently evolved virulence effectors converge onto hubs in a plant immune system network.
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, Poulin MM, Gebreab F, Gutierrez BJ, Tam S, Monachello D, Boxem M, Harbort CJ, McDonald N, Gai L, Chen H, He Y; European Union Effectoromics Consortium; Vandenhaute J, Roth FP, Hill DE, Ecker JR, Vidal M, Beynon J, Braun P, Dangl JL. Mukhtar MS, et al. Among authors: moore j. Science. 2011 Jul 29;333(6042):596-601. doi: 10.1126/science.1203659. Science. 2011. PMID: 21798943 Free PMC article.
Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000.
Lewis LA, Polanski K, de Torres-Zabala M, Jayaraman S, Bowden L, Moore J, Penfold CA, Jenkins DJ, Hill C, Baxter L, Kulasekaran S, Truman W, Littlejohn G, Prusinska J, Mead A, Steinbrenner J, Hickman R, Rand D, Wild DL, Ott S, Buchanan-Wollaston V, Smirnoff N, Beynon J, Denby K, Grant M. Lewis LA, et al. Among authors: moore j. Plant Cell. 2015 Nov;27(11):3038-64. doi: 10.1105/tpc.15.00471. Epub 2015 Nov 13. Plant Cell. 2015. PMID: 26566919 Free PMC article.
MEME-LaB: motif analysis in clusters.
Brown P, Baxter L, Hickman R, Beynon J, Moore JD, Ott S. Brown P, et al. Among authors: moore jd. Bioinformatics. 2013 Jul 1;29(13):1696-7. doi: 10.1093/bioinformatics/btt248. Epub 2013 May 16. Bioinformatics. 2013. PMID: 23681125 Free PMC article.
A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves.
Hickman R, Hill C, Penfold CA, Breeze E, Bowden L, Moore JD, Zhang P, Jackson A, Cooke E, Bewicke-Copley F, Mead A, Beynon J, Wild DL, Denby KJ, Ott S, Buchanan-Wollaston V. Hickman R, et al. Among authors: moore jd. Plant J. 2013 Jul;75(1):26-39. doi: 10.1111/tpj.12194. Epub 2013 May 11. Plant J. 2013. PMID: 23578292 Free PMC article.
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atwell S, Kliebenstein DJ, Kim YS, Stegle O, Borgwardt K, Zhang C, Tabrett A, Legaie R, Moore J, Finkenstadt B, Wild DL, Mead A, Rand D, Beynon J, Ott S, Buchanan-Wollaston V, Denby KJ. Windram O, et al. Among authors: moore j. Plant Cell. 2012 Sep;24(9):3530-57. doi: 10.1105/tpc.112.102046. Epub 2012 Sep 28. Plant Cell. 2012. PMID: 23023172 Free PMC article.
Time-series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves.
Alvarez-Fernandez R, Penfold CA, Galvez-Valdivieso G, Exposito-Rodriguez M, Stallard EJ, Bowden L, Moore JD, Mead A, Davey PA, Matthews JSA, Beynon J, Buchanan-Wollaston V, Wild DL, Lawson T, Bechtold U, Denby KJ, Mullineaux PM. Alvarez-Fernandez R, et al. Among authors: moore jd. Plant J. 2021 Sep;107(5):1363-1386. doi: 10.1111/tpj.15384. Epub 2021 Aug 6. Plant J. 2021. PMID: 34160110 Free article.
Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis.
Bechtold U, Penfold CA, Jenkins DJ, Legaie R, Moore JD, Lawson T, Matthews JS, Vialet-Chabrand SR, Baxter L, Subramaniam S, Hickman R, Florance H, Sambles C, Salmon DL, Feil R, Bowden L, Hill C, Baker NR, Lunn JE, Finkenstädt B, Mead A, Buchanan-Wollaston V, Beynon J, Rand DA, Wild DL, Denby KJ, Ott S, Smirnoff N, Mullineaux PM. Bechtold U, et al. Among authors: moore jd. Plant Cell. 2016 Feb;28(2):345-66. doi: 10.1105/tpc.15.00910. Epub 2016 Feb 3. Plant Cell. 2016. PMID: 26842464 Free PMC article.
Changes in Gene Expression in Space and Time Orchestrate Environmentally Mediated Shaping of Root Architecture.
Walker L, Boddington C, Jenkins D, Wang Y, Grønlund JT, Hulsmans J, Kumar S, Patel D, Moore JD, Carter A, Samavedam S, Bonomo G, Hersh DS, Coruzzi GM, Burroughs NJ, Gifford ML. Walker L, et al. Among authors: moore jd. Plant Cell. 2017 Oct;29(10):2393-2412. doi: 10.1105/tpc.16.00961. Epub 2017 Sep 11. Plant Cell. 2017. PMID: 28893852 Free PMC article.
Genetic regulation of glucoraphanin accumulation in Beneforté broccoli.
Traka MH, Saha S, Huseby S, Kopriva S, Walley PG, Barker GC, Moore J, Mero G, van den Bosch F, Constant H, Kelly L, Schepers H, Boddupalli S, Mithen RF. Traka MH, et al. Among authors: moore j. New Phytol. 2013 Jun;198(4):1085-1095. doi: 10.1111/nph.12232. Epub 2013 Apr 8. New Phytol. 2013. PMID: 23560984 Free PMC article.
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