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Exploring single-cell data with deep multitasking neural networks.
Amodio M, van Dijk D, Srinivasan K, Chen WS, Mohsen H, Moon KR, Campbell A, Zhao Y, Wang X, Venkataswamy M, Desai A, Ravi V, Kumar P, Montgomery R, Wolf G, Krishnaswamy S. Amodio M, et al. Among authors: moon kr. Nat Methods. 2019 Nov;16(11):1139-1145. doi: 10.1038/s41592-019-0576-7. Epub 2019 Oct 7. Nat Methods. 2019. PMID: 31591579 Free PMC article.
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion.
van Dijk D, Sharma R, Nainys J, Yim K, Kathail P, Carr AJ, Burdziak C, Moon KR, Chaffer CL, Pattabiraman D, Bierie B, Mazutis L, Wolf G, Krishnaswamy S, Pe'er D. van Dijk D, et al. Among authors: moon kr. Cell. 2018 Jul 26;174(3):716-729.e27. doi: 10.1016/j.cell.2018.05.061. Epub 2018 Jun 28. Cell. 2018. PMID: 29961576 Free PMC article.
Visualizing structure and transitions in high-dimensional biological data.
Moon KR, van Dijk D, Wang Z, Gigante S, Burkhardt DB, Chen WS, Yim K, Elzen AVD, Hirn MJ, Coifman RR, Ivanova NB, Wolf G, Krishnaswamy S. Moon KR, et al. Nat Biotechnol. 2019 Dec;37(12):1482-1492. doi: 10.1038/s41587-019-0336-3. Epub 2019 Dec 3. Nat Biotechnol. 2019. PMID: 31796933 Free PMC article.
Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.
Zhao Y, Amodio M, Vander Wyk B, Gerritsen B, Kumar MM, van Dijk D, Moon K, Wang X, Malawista A, Richards MM, Cahill ME, Desai A, Sivadasan J, Venkataswamy MM, Ravi V, Fikrig E, Kumar P, Kleinstein SH, Krishnaswamy S, Montgomery RR. Zhao Y, et al. PLoS Negl Trop Dis. 2020 Mar 9;14(3):e0008112. doi: 10.1371/journal.pntd.0008112. eCollection 2020 Mar. PLoS Negl Trop Dis. 2020. PMID: 32150565 Free PMC article.
Coarse Graining of Data via Inhomogeneous Diffusion Condensation.
Brugnone N, Gonopolskiy A, Moyle MW, Kuchroo M, van Dijk D, Moon KR, Colon-Ramos D, Wolf G, Hirn MJ, Krishnaswamy S. Brugnone N, et al. Among authors: moon kr. Proc IEEE Int Conf Big Data. 2019 Dec;2019:2624-2633. doi: 10.1109/BigData47090.2019.9006013. Epub 2020 Feb 24. Proc IEEE Int Conf Big Data. 2019. PMID: 32747879 Free PMC article.
Structural and developmental principles of neuropil assembly in C. elegans.
Moyle MW, Barnes KM, Kuchroo M, Gonopolskiy A, Duncan LH, Sengupta T, Shao L, Guo M, Santella A, Christensen R, Kumar A, Wu Y, Moon KR, Wolf G, Krishnaswamy S, Bao Z, Shroff H, Mohler WA, Colón-Ramos DA. Moyle MW, et al. Among authors: moon kr. Nature. 2021 Mar;591(7848):99-104. doi: 10.1038/s41586-020-03169-5. Epub 2021 Feb 24. Nature. 2021. PMID: 33627875 Free PMC article.
Gaining Biological Insights through Supervised Data Visualization.
Rhodes JS, Aumon A, Morin S, Girard M, Larochelle C, Brunet-Ratnasingham E, Pagliuzza A, Marchitto L, Zhang W, Cutler A, Grand'Maison F, Zhou A, Finzi A, Chomont N, Kaufmann DE, Zandee S, Prat A, Wolf G, Moon KR. Rhodes JS, et al. Among authors: moon kr. bioRxiv [Preprint]. 2024 Jan 21:2023.11.22.568384. doi: 10.1101/2023.11.22.568384. bioRxiv. 2024. PMID: 38293135 Free PMC article. Preprint.
36 results