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TOGGLE: toolbox for generic NGS analyses.
Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M, Sabot F. Monat C, et al. BMC Bioinformatics. 2015 Nov 9;16:374. doi: 10.1186/s12859-015-0795-6. BMC Bioinformatics. 2015. PMID: 26552596 Free PMC article.
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.
Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y. Cubry P, et al. Among authors: monat c. Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5. Curr Biol. 2018. PMID: 29983312 Free article.
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools.
Monat C, Padmarasu S, Lux T, Wicker T, Gundlach H, Himmelbach A, Ens J, Li C, Muehlbauer GJ, Schulman AH, Waugh R, Braumann I, Pozniak C, Scholz U, Mayer KFX, Spannagl M, Stein N, Mascher M. Monat C, et al. Genome Biol. 2019 Dec 18;20(1):284. doi: 10.1186/s13059-019-1899-5. Genome Biol. 2019. PMID: 31849336 Free PMC article.
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding.
Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, Ranoux M, Alberti A, Wincker P, Choulet F. Aury JM, et al. Among authors: monat c. Gigascience. 2022 Apr 28;11:giac034. doi: 10.1093/gigascience/giac034. Gigascience. 2022. PMID: 35482491 Free PMC article.
The barley pan-genome reveals the hidden legacy of mutation breeding.
Jayakodi M, Padmarasu S, Haberer G, Bonthala VS, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang XQ, Angessa TT, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston LB, Plott C, Jenkins J, Guo Y, Fiebig A, Budak H, Xu D, Zhang J, Wang C, Grimwood J, Schmutz J, Guo G, Zhang G, Mochida K, Hirayama T, Sato K, Chalmers KJ, Langridge P, Waugh R, Pozniak CJ, Scholz U, Mayer KFX, Spannagl M, Li C, Mascher M, Stein N. Jayakodi M, et al. Among authors: monat c. Nature. 2020 Dec;588(7837):284-289. doi: 10.1038/s41586-020-2947-8. Epub 2020 Nov 25. Nature. 2020. PMID: 33239781 Free PMC article.
Prospects of pan-genomics in barley.
Monat C, Schreiber M, Stein N, Mascher M. Monat C, et al. Theor Appl Genet. 2019 Mar;132(3):785-796. doi: 10.1007/s00122-018-3234-z. Epub 2018 Nov 16. Theor Appl Genet. 2019. PMID: 30446793 Review.
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes.
Shimizu KK, Copetti D, Okada M, Wicker T, Tameshige T, Hatakeyama M, Shimizu-Inatsugi R, Aquino C, Nishimura K, Kobayashi F, Murata K, Kuo T, Delorean E, Poland J, Haberer G, Spannagl M, Mayer KFX, Gutierrez-Gonzalez J, Muehlbauer GJ, Monat C, Himmelbach A, Padmarasu S, Mascher M, Walkowiak S, Nakazaki T, Ban T, Kawaura K, Tsuji H, Pozniak C, Stein N, Sese J, Nasuda S, Handa H. Shimizu KK, et al. Among authors: monat c. Plant Cell Physiol. 2021 Mar 25;62(1):8-27. doi: 10.1093/pcp/pcaa152. Plant Cell Physiol. 2021. PMID: 33244607 Free PMC article.
58 results