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A primer on deep learning in genomics.
Zou J, Huss M, Abid A, Mohammadi P, Torkamani A, Telenti A. Zou J, et al. Among authors: mohammadi p. Nat Genet. 2019 Jan;51(1):12-18. doi: 10.1038/s41588-018-0295-5. Epub 2018 Nov 26. Nat Genet. 2019. PMID: 30478442 Review.
Analysis of stop-gain and frameshift variants in human innate immunity genes.
Rausell A, Mohammadi P, McLaren PJ, Bartha I, Xenarios I, Fellay J, Telenti A. Rausell A, et al. Among authors: mohammadi p. PLoS Comput Biol. 2014 Jul 24;10(7):e1003757. doi: 10.1371/journal.pcbi.1003757. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25058640 Free PMC article.
The impact of rare variation on gene expression across tissues.
Li X, Kim Y, Tsang EK, Davis JR, Damani FN, Chiang C, Hess GT, Zappala Z, Strober BJ, Scott AJ, Li A, Ganna A, Bassik MC, Merker JD; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site—NDRI; Biospecimen Collection Source Site—RPCI; Biospecimen Core Resource—VARI; Brain Bank Repository—University of Miami Brain Endowment Bank; Leidos Biomedical—Project Management; ELSI Study; Genome Browser Data Integration &Visualization—EBI; Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz; Hall IM, Battle A, Montgomery SB. Li X, et al. Nature. 2017 Oct 11;550(7675):239-243. doi: 10.1038/nature24267. Nature. 2017. PMID: 29022581 Free PMC article.
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection.
Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A. Golumbeanu M, et al. Among authors: mohammadi p. Sci Rep. 2019 Jan 18;9(1):213. doi: 10.1038/s41598-018-36135-3. Sci Rep. 2019. PMID: 30659199 Free PMC article.
24 hours in the life of HIV-1 in a T cell line.
Mohammadi P, Desfarges S, Bartha I, Joos B, Zangger N, Muñoz M, Günthard HF, Beerenwinkel N, Telenti A, Ciuffi A. Mohammadi P, et al. PLoS Pathog. 2013 Jan;9(1):e1003161. doi: 10.1371/journal.ppat.1003161. Epub 2013 Jan 31. PLoS Pathog. 2013. PMID: 23382686 Free PMC article.
Dynamics of HIV latency and reactivation in a primary CD4+ T cell model.
Mohammadi P, di Iulio J, Muñoz M, Martinez R, Bartha I, Cavassini M, Thorball C, Fellay J, Beerenwinkel N, Ciuffi A, Telenti A. Mohammadi P, et al. PLoS Pathog. 2014 May 29;10(5):e1004156. doi: 10.1371/journal.ppat.1004156. eCollection 2014 May. PLoS Pathog. 2014. PMID: 24875931 Free PMC article.
Bioinformatics and HIV latency.
Ciuffi A, Mohammadi P, Golumbeanu M, di Iulio J, Telenti A. Ciuffi A, et al. Among authors: mohammadi p. Curr HIV/AIDS Rep. 2015 Mar;12(1):97-106. doi: 10.1007/s11904-014-0240-x. Curr HIV/AIDS Rep. 2015. PMID: 25586146 Free PMC article. Review.
277 results