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ntEdit: scalable genome sequence polishing.
Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I. Warren RL, et al. Among authors: mohamadi h. Bioinformatics. 2019 Nov 1;35(21):4430-4432. doi: 10.1093/bioinformatics/btz400. Bioinformatics. 2019. PMID: 31095290 Free PMC article.
ntHash: recursive nucleotide hashing.
Mohamadi H, Chu J, Vandervalk BP, Birol I. Mohamadi H, et al. Bioinformatics. 2016 Nov 15;32(22):3492-3494. doi: 10.1093/bioinformatics/btw397. Epub 2016 Jul 16. Bioinformatics. 2016. PMID: 27423894 Free PMC article.
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
Jackman SD, Vandervalk BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, Birol I. Jackman SD, et al. Among authors: mohamadi h. Genome Res. 2017 May;27(5):768-777. doi: 10.1101/gr.214346.116. Epub 2017 Feb 23. Genome Res. 2017. PMID: 28232478 Free PMC article.
Tigmint: correcting assembly errors using linked reads from large molecules.
Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I. Jackman SD, et al. Among authors: mohamadi h. BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6. BMC Bioinformatics. 2018. PMID: 30367597 Free PMC article.
ntHash2: recursive spaced seed hashing for nucleotide sequences.
Kazemi P, Wong J, Nikolić V, Mohamadi H, Warren RL, Birol I. Kazemi P, et al. Among authors: mohamadi h. Bioinformatics. 2022 Oct 14;38(20):4812-4813. doi: 10.1093/bioinformatics/btac564. Bioinformatics. 2022. PMID: 36000872 Free PMC article.
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.
Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J, Birol I, Bohlmann J. Warren RL, et al. Among authors: mohamadi h. Plant J. 2015 Jul;83(2):189-212. doi: 10.1111/tpj.12886. Epub 2015 Jun 19. Plant J. 2015. PMID: 26017574 Free article.
32 results