Mirzazadeh R - Search Results

1

A recurrent chromosomal inversion suffices for driving escape from oncogene-induced senescence via subTAD reorganization.

Zampetidis CP, Galanos P, Angelopoulou A, Zhu Y, Polyzou A, Karamitros T, Kotsinas A, Lagopati N, Mourkioti I, Mirzazadeh R, Polyzos A, Garnerone S, Mizi A, Gusmao EG, Sofiadis K, Gál Z, Larsen DH, Pefani DE, Demaria M, Tsirigos A, Crosetto N, Maya-Mendoza A, Papaspyropoulos A, Evangelou K, Bartek J, Papantonis A, Gorgoulis VG. Zampetidis CP, et al. Among authors: mirzazadeh r. Mol Cell. 2021 Dec 2;81(23):4907-4923.e8. doi: 10.1016/j.molcel.2021.10.017. Epub 2021 Nov 17. Mol Cell. 2021. PMID: 34793711 Free article.

2

Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples.

Mirzazadeh R, Andrusivova Z, Larsson L, Newton PT, Galicia LA, Abalo XM, Avijgan M, Kvastad L, Denadai-Souza A, Stakenborg N, Firsova AB, Shamikh A, Jurek A, Schultz N, Nistér M, Samakovlis C, Boeckxstaens G, Lundeberg J. Mirzazadeh R, et al. Nat Commun. 2023 Jan 31;14(1):509. doi: 10.1038/s41467-023-36071-5. Nat Commun. 2023. PMID: 36720873 Free PMC article.

3

BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.

Yan WX, Mirzazadeh R, Garnerone S, Scott D, Schneider MW, Kallas T, Custodio J, Wernersson E, Li Y, Gao L, Federova Y, Zetsche B, Zhang F, Bienko M, Crosetto N. Yan WX, et al. Among authors: mirzazadeh r. Nat Commun. 2017 May 12;8:15058. doi: 10.1038/ncomms15058. Nat Commun. 2017. PMID: 28497783 Free PMC article.

4

Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.

Mirzazadeh R, Kallas T, Bienko M, Crosetto N. Mirzazadeh R, et al. Methods Mol Biol. 2018;1672:167-194. doi: 10.1007/978-1-4939-7306-4_14. Methods Mol Biol. 2018. PMID: 29043625

5

Modeling double strand break susceptibility to interrogate structural variation in cancer.

Ballinger TJ, Bouwman BAM, Mirzazadeh R, Garnerone S, Crosetto N, Semple CA. Ballinger TJ, et al. Among authors: mirzazadeh r. Genome Biol. 2019 Feb 8;20(1):28. doi: 10.1186/s13059-019-1635-1. Genome Biol. 2019. PMID: 30736820 Free PMC article.

6

CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.

Zhang X, Garnerone S, Simonetti M, Harbers L, Nicoś M, Mirzazadeh R, Venesio T, Sapino A, Hartman J, Marchiò C, Bienko M, Crosetto N. Zhang X, et al. Among authors: mirzazadeh r. Nat Commun. 2019 Oct 18;10(1):4732. doi: 10.1038/s41467-019-12570-2. Nat Commun. 2019. PMID: 31628304 Free PMC article.

7

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.

Wu C, Simonetti M, Rossell C, Mignardi M, Mirzazadeh R, Annaratone L, Marchiò C, Sapino A, Bienko M, Crosetto N, Nilsson M. Wu C, et al. Among authors: mirzazadeh r. Commun Biol. 2018 Nov 28;1:209. doi: 10.1038/s42003-018-0218-0. eCollection 2018. Commun Biol. 2018. PMID: 30511022 Free PMC article.

8

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.

Gelali E, Girelli G, Matsumoto M, Wernersson E, Custodio J, Mota A, Schweitzer M, Ferenc K, Li X, Mirzazadeh R, Agostini F, Schell JP, Lanner F, Crosetto N, Bienko M. Gelali E, et al. Among authors: mirzazadeh r. Nat Commun. 2019 Apr 9;10(1):1636. doi: 10.1038/s41467-019-09616-w. Nat Commun. 2019. PMID: 30967549 Free PMC article.

9

Spatially resolved clonal copy number alterations in benign and malignant tissue.

Erickson A, He M, Berglund E, Marklund M, Mirzazadeh R, Schultz N, Kvastad L, Andersson A, Bergenstråhle L, Bergenstråhle J, Larsson L, Alonso Galicia L, Shamikh A, Basmaci E, Díaz De Ståhl T, Rajakumar T, Doultsinos D, Thrane K, Ji AL, Khavari PA, Tarish F, Tanoglidi A, Maaskola J, Colling R, Mirtti T, Hamdy FC, Woodcock DJ, Helleday T, Mills IG, Lamb AD, Lundeberg J. Erickson A, et al. Among authors: mirzazadeh r. Nature. 2022 Aug;608(7922):360-367. doi: 10.1038/s41586-022-05023-2. Epub 2022 Aug 10. Nature. 2022. PMID: 35948708 Free PMC article.

10

In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation.

Wu CC, Klaesson A, Buskas J, Ranefall P, Mirzazadeh R, Söderberg O, Wolf JBW. Wu CC, et al. Among authors: mirzazadeh r. J Exp Biol. 2019 Mar 8;222(Pt 5):jeb194431. doi: 10.1242/jeb.194431. J Exp Biol. 2019. PMID: 30718374 Free PMC article.

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