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Synthesis of phylogeny and taxonomy into a comprehensive tree of life.
Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD 4th, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA. Hinchliff CE, et al. Among authors: midford pe. Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12764-9. doi: 10.1073/pnas.1423041112. Epub 2015 Sep 18. Proc Natl Acad Sci U S A. 2015. PMID: 26385966 Free PMC article.
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G. Stoltzfus A, et al. Among authors: midford pe. BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158. BMC Bioinformatics. 2013. PMID: 23668630 Free PMC article.
Finding our way through phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Deans AR, et al. Among authors: midford pe. PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan. PLoS Biol. 2015. PMID: 25562316 Free PMC article.
Ontologies for behavior.
Midford PE. Midford PE. Bioinformatics. 2004 Dec 12;20(18):3700-1. doi: 10.1093/bioinformatics/bth433. Epub 2004 Jul 29. Bioinformatics. 2004. PMID: 15284105
Phenex: ontological annotation of phenotypic diversity.
Balhoff JP, Dahdul WM, Kothari CR, Lapp H, Lundberg JG, Mabee P, Midford PE, Westerfield M, Vision TJ. Balhoff JP, et al. Among authors: midford pe. PLoS One. 2010 May 5;5(5):e10500. doi: 10.1371/journal.pone.0010500. PLoS One. 2010. PMID: 20463926 Free PMC article.
The teleost anatomy ontology: anatomical representation for the genomics age.
Dahdul WM, Lundberg JG, Midford PE, Balhoff JP, Lapp H, Vision TJ, Haendel MA, Westerfield M, Mabee PM. Dahdul WM, et al. Among authors: midford pe. Syst Biol. 2010 Jul;59(4):369-83. doi: 10.1093/sysbio/syq013. Epub 2010 Mar 29. Syst Biol. 2010. PMID: 20547776 Free PMC article.
30 results