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Page 1
The GA4GH Phenopacket schema defines a computable representation of clinical data.
Jacobsen JOB, Baudis M, Baynam GS, Beckmann JS, Beltran S, Buske OJ, Callahan TJ, Chute CG, Courtot M, Danis D, Elemento O, Essenwanger A, Freimuth RR, Gargano MA, Groza T, Hamosh A, Harris NL, Kaliyaperumal R, Lloyd KCK, Khalifa A, Krawitz PM, Köhler S, Laraway BJ, Lehväslaiho H, Matalonga L, McMurry JA, Metke-Jimenez A, Mungall CJ, Munoz-Torres MC, Ogishima S, Papakonstantinou A, Piscia D, Pontikos N, Queralt-Rosinach N, Roos M, Sass J, Schofield PN, Seelow D, Siapos A, Smedley D, Smith LD, Steinhaus R, Sundaramurthi JC, Swietlik EM, Thun S, Vasilevsky NA, Wagner AH, Warner JL, Weiland C; GAGH Phenopacket Modeling Consortium; Haendel MA, Robinson PN. Jacobsen JOB, et al. Among authors: metke jimenez a. Nat Biotechnol. 2022 Jun;40(6):817-820. doi: 10.1038/s41587-022-01357-4. Nat Biotechnol. 2022. PMID: 35705716 Free PMC article. No abstract available.
GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, Boughtwood TF, Bourque G, Bowers SR, Brookes AJ, Brudno M, Brush MH, Bujold D, Burdett T, Buske OJ, Cabili MN, Cameron DL, Carroll RJ, Casas-Silva E, Chakravarty D, Chaudhari BP, Chen SH, Cherry JM, Chung J, Cline M, Clissold HL, Cook-Deegan RM, Courtot M, Cunningham F, Cupak M, Davies RM, Denisko D, Doerr MJ, Dolman LI, Dove ES, Dursi LJ, Dyke SOM, Eddy JA, Eilbeck K, Ellrott KP, Fairley S, Fakhro KA, Firth HV, Fitzsimons MS, Fiume M, Flicek P, Fore IM, Freeberg MA, Freimuth RR, Fromont LA, Fuerth J, Gaff CL, Gan W, Ghanaim EM, Glazer D, Green RC, Griffith M, Griffith OL, Grossman RL, Groza T, Auvil JMG, Guigó R, Gupta D, Haendel MA, Hamosh A, Hansen DP, Hart RK, Hartley DM, Haussler D, Hendricks-Sturrup RM, Ho CWL, Hobb AE, Hoffman MM, Hofmann OM, Holub P, Hsu JS, Hubaux JP, Hunt SE, Husami A, Jacobsen JO, Jamuar SS, Janes EL, Jeanson F, Jené A, Johns AL, Joly Y, Jones SJM, Kanitz A, Kato K, Keane TM, Kekesi-Lafrance K, Kelleher J, Kerry G, Khor SS, Knoppers BM, Konopko MA, Kosaki K, Kuba M, Lawson J, Leinonen R, Li S… See abstract for full author list ➔ Rehm HL, et al. Among authors: metke jimenez a. Cell Genom. 2021 Nov 10;1(2):100029. doi: 10.1016/j.xgen.2021.100029. Cell Genom. 2021. PMID: 35072136 Free PMC article.
FHIRCap: Transforming REDCap forms into FHIR resources.
Metke-Jimenez A, Hansen D. Metke-Jimenez A, et al. AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:54-63. eCollection 2019. AMIA Jt Summits Transl Sci Proc. 2019. PMID: 31258956 Free PMC article.
Ontoserver: a syndicated terminology server.
Metke-Jimenez A, Steel J, Hansen D, Lawley M. Metke-Jimenez A, et al. J Biomed Semantics. 2018 Sep 17;9(1):24. doi: 10.1186/s13326-018-0191-z. J Biomed Semantics. 2018. PMID: 30223897 Free PMC article.
A SMART on FHIR Prototype for Genomic Test Ordering.
Metke-Jimenez A, Harrap K, Conlan D, Gibson S, Pearson J, Hansen D. Metke-Jimenez A, et al. Stud Health Technol Inform. 2019 Aug 8;266:121-126. doi: 10.3233/SHTI190783. Stud Health Technol Inform. 2019. PMID: 31397312
Interoperable medical data: The missing link for understanding COVID-19.
Bauer DC, Metke-Jimenez A, Maurer-Stroh S, Tiruvayipati S, Wilson LOW, Jain Y, Perrin A, Ebrill K, Hansen DP, Vasan SS. Bauer DC, et al. Among authors: metke jimenez a. Transbound Emerg Dis. 2021 Jul;68(4):1753-1760. doi: 10.1111/tbed.13892. Epub 2021 Jan 29. Transbound Emerg Dis. 2021. PMID: 33095970 Free PMC article.
Semantic Search for Large Scale Clinical Ontologies.
Ngo DH, Kemp M, Truran D, Koopman B, Metke-Jimenez A. Ngo DH, et al. Among authors: metke jimenez a. AMIA Annu Symp Proc. 2022 Feb 21;2021:910-919. eCollection 2021. AMIA Annu Symp Proc. 2022. PMID: 35308904 Free PMC article.
Pathling: analytics on FHIR.
Grimes J, Szul P, Metke-Jimenez A, Lawley M, Loi K. Grimes J, et al. Among authors: metke jimenez a. J Biomed Semantics. 2022 Sep 8;13(1):23. doi: 10.1186/s13326-022-00277-1. J Biomed Semantics. 2022. PMID: 36076268 Free PMC article.
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