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SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.
Nat Methods. 2024 May;21(5):793-797. doi: 10.1038/s41592-024-02229-2. Epub 2024 Mar 20.
Nat Methods. 2024.
PMID: 38509328
Free PMC article.
SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark.
Mestre-Tomás J, Liu T, Pardo-Palacios F, Conesa A.
Mestre-Tomás J, et al.
Genome Biol. 2023 Dec 11;24(1):286. doi: 10.1186/s13059-023-03127-0.
Genome Biol. 2023.
PMID: 38082294
Free PMC article.
Item in Clipboard
SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark.
Mestre-Tomás J, Liu T, Pardo-Palacios F, Conesa A.
Mestre-Tomás J, et al.
bioRxiv [Preprint]. 2023 Aug 24:2023.08.23.554392. doi: 10.1101/2023.08.23.554392.
bioRxiv. 2023.
PMID: 37662216
Free PMC article.
Updated.
Preprint.
Item in Clipboard
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, Li H, Jerryd Meade M, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Hasan Çelik M, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Liang Li J, Lienhard M, Mikheenko A, Mulligan D, Ming Nip K, Pertea M, Ritchie ME, Sim AD, Tang AD, Kei Wan Y, Wang C, Wong BY, Yang C, Barnes I, Berry A, Capella S, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Goetz S, Hernández-Ferrer C, Kondratova L, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Laird Smith M, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Fai Au K, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN.
Pardo-Palacios FJ, et al. Among authors: mestre tomas j.
bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550582. doi: 10.1101/2023.07.25.550582.
bioRxiv. 2023.
PMID: 37546854
Free PMC article.
Preprint.
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SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.
Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A.
Pardo-Palacios FJ, et al. Among authors: mestre tomas j.
bioRxiv [Preprint]. 2023 Jun 3:2023.05.17.541248. doi: 10.1101/2023.05.17.541248.
bioRxiv. 2023.
PMID: 37398077
Free PMC article.
Updated.
Preprint.
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Chitosan Modulates Volatile Organic Compound Emission from the Biocontrol Fungus Pochonia chlamydosporia.
Mestre-Tomás J, Esgueva-Vilà D, Fuster-Alonso A, Lopez-Moya F, Lopez-Llorca LV.
Mestre-Tomás J, et al.
Molecules. 2023 May 12;28(10):4053. doi: 10.3390/molecules28104053.
Molecules. 2023.
PMID: 37241794
Free PMC article.
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