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Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y.
Nat Commun. 2021.
PMID: 34893598
Free PMC article.
A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light.
Hou S, Thiergart T, Vannier N, Mesny F, Ziegler J, Pickel B, Hacquard S.
Hou S, et al. Among authors: mesny f.
Nat Plants. 2021 Aug;7(8):1078-1092. doi: 10.1038/s41477-021-00956-4. Epub 2021 Jul 5.
Nat Plants. 2021.
PMID: 34226690
Free PMC article.
Item in Clipboard
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC.
Meyer F, et al. Among authors: mesny f.
Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8.
Nat Methods. 2022.
PMID: 35396482
Free PMC article.
Item in Clipboard
A simple guide to de novo transcriptome assembly and annotation.
Raghavan V, Kraft L, Mesny F, Rigerte L.
Raghavan V, et al. Among authors: mesny f.
Brief Bioinform. 2022 Mar 10;23(2):bbab563. doi: 10.1093/bib/bbab563.
Brief Bioinform. 2022.
PMID: 35076693
Free PMC article.
Review.
Item in Clipboard
Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota.
Vannier N, Mesny F, Getzke F, Chesneau G, Dethier L, Ordon J, Thiergart T, Hacquard S.
Vannier N, et al. Among authors: mesny f.
Nat Commun. 2023 Dec 13;14(1):8274. doi: 10.1038/s41467-023-43688-z.
Nat Commun. 2023.
PMID: 38092730
Free PMC article.
Item in Clipboard
Co-evolution within the plant holobiont drives host performance.
Mesny F, Hacquard S, Thomma BP.
Mesny F, et al.
EMBO Rep. 2023 Sep 6;24(9):e57455. doi: 10.15252/embr.202357455. Epub 2023 Jul 20.
EMBO Rep. 2023.
PMID: 37471099
Free PMC article.
Review.
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