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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.
Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A. Meehan CJ, et al. Among authors: menardo f. Nat Rev Microbiol. 2019 Sep;17(9):533-545. doi: 10.1038/s41579-019-0214-5. Nat Rev Microbiol. 2019. PMID: 31209399 Review.
A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.
Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, Fyfe JA, Coscolla M, Gagneux S. Brites D, et al. Among authors: menardo f. Front Microbiol. 2018 Nov 27;9:2820. doi: 10.3389/fmicb.2018.02820. eCollection 2018. Front Microbiol. 2018. PMID: 30538680 Free PMC article.
The molecular clock of Mycobacterium tuberculosis.
Menardo F, Duchêne S, Brites D, Gagneux S. Menardo F, et al. PLoS Pathog. 2019 Sep 12;15(9):e1008067. doi: 10.1371/journal.ppat.1008067. eCollection 2019 Sep. PLoS Pathog. 2019. PMID: 31513651 Free PMC article.
An African origin for Mycobacterium bovis.
Loiseau C, Menardo F, Aseffa A, Hailu E, Gumi B, Ameni G, Berg S, Rigouts L, Robbe-Austerman S, Zinsstag J, Gagneux S, Brites D. Loiseau C, et al. Among authors: menardo f. Evol Med Public Health. 2020 Jan 31;2020(1):49-59. doi: 10.1093/emph/eoaa005. eCollection 2020. Evol Med Public Health. 2020. PMID: 32211193 Free PMC article.
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region.
Ngabonziza JCS, Loiseau C, Marceau M, Jouet A, Menardo F, Tzfadia O, Antoine R, Niyigena EB, Mulders W, Fissette K, Diels M, Gaudin C, Duthoy S, Ssengooba W, André E, Kaswa MK, Habimana YM, Brites D, Affolabi D, Mazarati JB, de Jong BC, Rigouts L, Gagneux S, Meehan CJ, Supply P. Ngabonziza JCS, et al. Among authors: menardo f. Nat Commun. 2020 Jun 9;11(1):2917. doi: 10.1038/s41467-020-16626-6. Nat Commun. 2020. PMID: 32518235 Free PMC article.
Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history.
Coscolla M, Gagneux S, Menardo F, Loiseau C, Ruiz-Rodriguez P, Borrell S, Otchere ID, Asante-Poku A, Asare P, Sánchez-Busó L, Gehre F, Sanoussi CN, Antonio M, Affolabi D, Fyfe J, Beckert P, Niemann S, Alabi AS, Grobusch MP, Kobbe R, Parkhill J, Beisel C, Fenner L, Böttger EC, Meehan CJ, Harris SR, de Jong BC, Yeboah-Manu D, Brites D. Coscolla M, et al. Among authors: menardo f. Microb Genom. 2021 Feb;7(2):000477. doi: 10.1099/mgen.0.000477. Microb Genom. 2021. PMID: 33555243 Free PMC article.
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim.
Menardo F, Rutaihwa LK, Zwyer M, Borrell S, Comas I, Conceição EC, Coscolla M, Cox H, Joloba M, Dou HY, Feldmann J, Fenner L, Fyfe J, Gao Q, García de Viedma D, Garcia-Basteiro AL, Gygli SM, Hella J, Hiza H, Jugheli L, Kamwela L, Kato-Maeda M, Liu Q, Ley SD, Loiseau C, Mahasirimongkol S, Malla B, Palittapongarnpim P, Rakotosamimanana N, Rasolofo V, Reinhard M, Reither K, Sasamalo M, Silva Duarte R, Sola C, Suffys P, Batista Lima KV, Yeboah-Manu D, Beisel C, Brites D, Gagneux S. Menardo F, et al. F1000Res. 2021 Feb 1;10:60. doi: 10.12688/f1000research.28318.2. eCollection 2021. F1000Res. 2021. PMID: 33732436 Free PMC article.
28 results