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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D203-13. doi: 10.1093/nar/gks1201. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203884 Free PMC article.
Bioinformatics resources for the study of gene regulation in bacteria.
Collado-Vides J, Salgado H, Morett E, Gama-Castro S, Jiménez-Jacinto V, Martínez-Flores I, Medina-Rivera A, Muñiz-Rascado L, Peralta-Gil M, Santos-Zavaleta A. Collado-Vides J, et al. J Bacteriol. 2009 Jan;191(1):23-31. doi: 10.1128/JB.01017-08. Epub 2008 Oct 31. J Bacteriol. 2009. PMID: 18978060 Free PMC article. Review. No abstract available.
RSAT 2011: regulatory sequence analysis tools.
Thomas-Chollier M, Defrance M, Medina-Rivera A, Sand O, Herrmann C, Thieffry D, van Helden J. Thomas-Chollier M, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W86-91. doi: 10.1093/nar/gkr377. Nucleic Acids Res. 2011. PMID: 21715389 Free PMC article.
MACE: model based analysis of ChIP-exo.
Wang L, Chen J, Wang C, Uusküla-Reimand L, Chen K, Medina-Rivera A, Young EJ, Zimmermann MT, Yan H, Sun Z, Zhang Y, Wu ST, Huang H, Wilson MD, Kocher JP, Li W. Wang L, et al. Nucleic Acids Res. 2014 Nov 10;42(20):e156. doi: 10.1093/nar/gku846. Epub 2014 Sep 23. Nucleic Acids Res. 2014. PMID: 25249628 Free PMC article.
Structural and functional map of a bacterial nucleoid.
Martínez-Antonio A, Medina-Rivera A, Collado-Vides J. Martínez-Antonio A, et al. Genome Biol. 2009;10(12):247. doi: 10.1186/gb-2009-10-12-247. Epub 2009 Dec 11. Genome Biol. 2009. PMID: 19995411 Free PMC article. Review.
TwinsMX: Uncovering the Basis of Health and Disease in the Mexican Population.
Leon-Apodaca AV, Chiu-Han E, Ortega-Mora I, Román-López TV, Caballero-Sánchez U, Aldana-Assad O, Campos AI, Cuellar-Partida G, Ruiz-Contreras AE, Alcauter S, Rentería ME, Medina-Rivera A. Leon-Apodaca AV, et al. Twin Res Hum Genet. 2019 Dec;22(6):611-616. doi: 10.1017/thg.2019.112. Epub 2020 Jan 14. Twin Res Hum Genet. 2019. PMID: 31931895
The pharmacogenomics of selective serotonin reuptake inhibitors.
García-Marín LM, Rabinowitz JA, Ceja Z, Alcauter S, Medina-Rivera A, Rentería ME. García-Marín LM, et al. Among authors: medina rivera a. Pharmacogenomics. 2022 Jul;23(10):597-607. doi: 10.2217/pgs-2022-0037. Epub 2022 Jun 8. Pharmacogenomics. 2022. PMID: 35673953 Review.
MEX-PD: A National Network for the Epidemiological & Genetic Research of Parkinson's Disease.
Lázaro-Figueroa A, Reyes-Pérez P, Morelos-Figaredo E, Guerra-Galicia CM, Estrada-Bellmann I, Salinas-Barboza K, Matuk-Pérez Y, Gandarilla-Martínez NA, Caballero-Sánchez U, Flores-Ocampo V, Montés-Alcántara P, Espinosa-Méndez IM, Moral AZ, Gaspar-Martínez E, Vazquez-Guevara D, Rodríguez-Violante M, Inca-Martinez M, Mata IF, Alcauter S, Rentería ME, Medina-Rivera A, Ruiz-Contreras AE. Lázaro-Figueroa A, et al. Among authors: medina rivera a. medRxiv [Preprint]. 2023 Aug 31:2023.08.28.23294700. doi: 10.1101/2023.08.28.23294700. medRxiv. 2023. PMID: 37693616 Free PMC article. Preprint.
38 results