Medema MH - Search Results

1

Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology.

Wiegand S, Jogler M, Boedeker C, Pinto D, Vollmers J, Rivas-Marín E, Kohn T, Peeters SH, Heuer A, Rast P, Oberbeckmann S, Bunk B, Jeske O, Meyerdierks A, Storesund JE, Kallscheuer N, Lücker S, Lage OM, Pohl T, Merkel BJ, Hornburger P, Müller RW, Brümmer F, Labrenz M, Spormann AM, Op den Camp HJM, Overmann J, Amann R, Jetten MSM, Mascher T, Medema MH, Devos DP, Kaster AK, Øvreås L, Rohde M, Galperin MY, Jogler C. Wiegand S, et al. Among authors: medema mh. Nat Microbiol. 2020 Jan;5(1):126-140. doi: 10.1038/s41564-019-0588-1. Epub 2019 Nov 18. Nat Microbiol. 2020. PMID: 31740763 Free PMC article.

2

iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures.

Louwen JJR, Kautsar SA, van der Burg S, Medema MH, van der Hooft JJJ. Louwen JJR, et al. Among authors: medema mh. PLoS Comput Biol. 2023 Feb 9;19(2):e1010462. doi: 10.1371/journal.pcbi.1010462. eCollection 2023 Feb. PLoS Comput Biol. 2023. PMID: 36758069 Free PMC article.

3

Exploring the Interspecific Interactions and the Metabolome of the Soil Isolate Hylemonella gracilis.

Tyc O, Kulkarni P, Ossowicki A, Tracanna V, Medema MH, van Baarlen P, van IJcken WFJ, Verhoeven KJF, Garbeva P. Tyc O, et al. Among authors: medema mh. mSystems. 2023 Feb 23;8(1):e0057422. doi: 10.1128/msystems.00574-22. Epub 2022 Dec 20. mSystems. 2023. PMID: 36537799 Free PMC article.

4

cblaster: a remote search tool for rapid identification and visualization of homologous gene clusters.

Gilchrist CLM, Booth TJ, van Wersch B, van Grieken L, Medema MH, Chooi YH. Gilchrist CLM, et al. Among authors: medema mh. Bioinform Adv. 2021 Aug 5;1(1):vbab016. doi: 10.1093/bioadv/vbab016. eCollection 2021. Bioinform Adv. 2021. PMID: 36700093 Free PMC article.

5

CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters.

van den Belt M, Gilchrist C, Booth TJ, Chooi YH, Medema MH, Alanjary M. van den Belt M, et al. Among authors: medema mh. BMC Bioinformatics. 2023 May 3;24(1):181. doi: 10.1186/s12859-023-05311-2. BMC Bioinformatics. 2023. PMID: 37131131 Free PMC article.

6

Maize resistance to witchweed through changes in strigolactone biosynthesis.

Li C, Dong L, Durairaj J, Guan JC, Yoshimura M, Quinodoz P, Horber R, Gaus K, Li J, Setotaw YB, Qi J, De Groote H, Wang Y, Thiombiano B, Floková K, Walmsley A, Charnikhova TV, Chojnacka A, Correia de Lemos S, Ding Y, Skibbe D, Hermann K, Screpanti C, De Mesmaeker A, Schmelz EA, Menkir A, Medema M, Van Dijk ADJ, Wu J, Koch KE, Bouwmeester HJ. Li C, et al. Science. 2023 Jan 6;379(6627):94-99. doi: 10.1126/science.abq4775. Epub 2023 Jan 5. Science. 2023. PMID: 36603079

7

Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching.

Louwen JJR, Medema MH, van der Hooft JJJ. Louwen JJR, et al. Among authors: medema mh. Microbiome. 2023 Jan 23;11(1):13. doi: 10.1186/s40168-022-01444-3. Microbiome. 2023. PMID: 36691088 Free PMC article.

8

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.

Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich EJN, van Wezel GP, Medema MH, Weber T. Blin K, et al. Among authors: medema mh. Nucleic Acids Res. 2023 Jul 5;51(W1):W46-W50. doi: 10.1093/nar/gkad344. Nucleic Acids Res. 2023. PMID: 37140036 Free PMC article.

9

TbasCO: trait-based comparative 'omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome.

McDaniel EA, van Steenbrugge JJM, Noguera DR, McMahon KD, Raaijmakers JM, Medema MH, Oyserman BO. McDaniel EA, et al. Among authors: medema mh. ISME Commun. 2022 Nov 7;2(1):111. doi: 10.1038/s43705-022-00189-2. ISME Commun. 2022. PMID: 37938301 Free PMC article.

10

Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.

Ettwig KF, Shima S, van de Pas-Schoonen KT, Kahnt J, Medema MH, Op den Camp HJ, Jetten MS, Strous M. Ettwig KF, et al. Among authors: medema mh. Environ Microbiol. 2008 Nov;10(11):3164-73. doi: 10.1111/j.1462-2920.2008.01724.x. Epub 2008 Aug 20. Environ Microbiol. 2008. PMID: 18721142

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