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A roadmap for the functional annotation of protein families: a community perspective.
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J. de Crécy-Lagard V, et al. Among authors: mcwhite c. Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062. Database (Oxford). 2022. PMID: 35961013 Free PMC article.
Vision, challenges and opportunities for a Plant Cell Atlas.
Plant Cell Atlas Consortium; Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, Briggs SP, Brophy JA, Denolf P, Di Costanzo LF, Exposito-Alonso M, Giacomello S, Gomez-Cano F, Kaufmann K, Ko DK, Kumar S, Malkovskiy AV, Nakayama N, Obata T, Otegui MS, Palfalvi G, Quezada-Rodríguez EH, Singh R, Uhrig RG, Waese J, Van Wijk K, Wright RC, Ehrhardt DW, Birnbaum KD, Rhee SY. Plant Cell Atlas Consortium, et al. Elife. 2021 Sep 7;10:e66877. doi: 10.7554/eLife.66877. Elife. 2021. PMID: 34491200 Free PMC article.
Towards Consensus Gene Ages.
Liebeskind BJ, McWhite CD, Marcotte EM. Liebeskind BJ, et al. Genome Biol Evol. 2016 Jun 27;8(6):1812-23. doi: 10.1093/gbe/evw113. Genome Biol Evol. 2016. PMID: 27259914 Free PMC article.
A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies.
McWhite CD, Papoulas O, Drew K, Cox RM, June V, Dong OX, Kwon T, Wan C, Salmi ML, Roux SJ, Browning KS, Chen ZJ, Ronald PC, Marcotte EM. McWhite CD, et al. Cell. 2020 Apr 16;181(2):460-474.e14. doi: 10.1016/j.cell.2020.02.049. Epub 2020 Mar 18. Cell. 2020. PMID: 32191846 Free PMC article.
Co-fractionation/mass spectrometry to identify protein complexes.
McWhite CD, Papoulas O, Drew K, Dang V, Leggere JC, Sae-Lee W, Marcotte EM. McWhite CD, et al. STAR Protoc. 2021 Mar 10;2(1):100370. doi: 10.1016/j.xpro.2021.100370. eCollection 2021 Mar 19. STAR Protoc. 2021. PMID: 33748783 Free PMC article.
22 results