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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torre… See abstract for full author list ➔ Edwards RA, et al. Among authors: mcnair k. Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8. Nat Microbiol. 2019. PMID: 31285584 Free PMC article.
Multivariate analysis of functional metagenomes.
Dinsdale EA, Edwards RA, Bailey BA, Tuba I, Akhter S, McNair K, Schmieder R, Apkarian N, Creek M, Guan E, Hernandez M, Isaacs K, Peterson C, Regh T, Ponomarenko V. Dinsdale EA, et al. Among authors: mcnair k. Front Genet. 2013 Apr 2;4:41. doi: 10.3389/fgene.2013.00041. eCollection 2013. Front Genet. 2013. PMID: 23579547 Free PMC article.
Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis.
Eppinger M, McNair K, Zogaj X, Dinsdale EA, Edwards RA, Klose KE. Eppinger M, et al. Among authors: mcnair k. Genome Announc. 2013 Nov 7;1(6):e00926-13. doi: 10.1128/genomeA.00926-13. Genome Announc. 2013. PMID: 24201203 Free PMC article.
Computational approaches to predict bacteriophage-host relationships.
Edwards RA, McNair K, Faust K, Raes J, Dutilh BE. Edwards RA, et al. Among authors: mcnair k. FEMS Microbiol Rev. 2016 Mar;40(2):258-72. doi: 10.1093/femsre/fuv048. Epub 2015 Dec 9. FEMS Microbiol Rev. 2016. PMID: 26657537 Free PMC article. Review.
Lytic to temperate switching of viral communities.
Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F. Knowles B, et al. Among authors: mcnair k. Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Nature. 2016. PMID: 26982729
Phage Genome Annotation Using the RAST Pipeline.
McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R. McNair K, et al. Methods Mol Biol. 2018;1681:231-238. doi: 10.1007/978-1-4939-7343-9_17. Methods Mol Biol. 2018. PMID: 29134599
56 results