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Collaborative cloud-enabled tools allow rapid, reproducible biological insights.
Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: mcdonald d. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.
The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: mcdonald d. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
Rethinking "enterotypes".
Knights D, Ward TL, McKinlay CE, Miller H, Gonzalez A, McDonald D, Knight R. Knights D, et al. Among authors: mcdonald d. Cell Host Microbe. 2014 Oct 8;16(4):433-7. doi: 10.1016/j.chom.2014.09.013. Cell Host Microbe. 2014. PMID: 25299329 Free PMC article.
Ribosomal RNA, the lens into life.
McDonald D, Xu Z, Hyde ER, Knight R. McDonald D, et al. RNA. 2015 Apr;21(4):692-4. doi: 10.1261/rna.050799.115. RNA. 2015. PMID: 25780194 Free PMC article. No abstract available.
Context and the human microbiome.
McDonald D, Birmingham A, Knight R. McDonald D, et al. Microbiome. 2015 Nov 4;3:52. doi: 10.1186/s40168-015-0117-2. Microbiome. 2015. PMID: 26530830 Free PMC article. Review.
Extreme Dysbiosis of the Microbiome in Critical Illness.
McDonald D, Ackermann G, Khailova L, Baird C, Heyland D, Kozar R, Lemieux M, Derenski K, King J, Vis-Kampen C, Knight R, Wischmeyer PE. McDonald D, et al. mSphere. 2016 Aug 31;1(4):e00199-16. doi: 10.1128/mSphere.00199-16. eCollection 2016 Jul-Aug. mSphere. 2016. PMID: 27602409 Free PMC article.
1,661 results