McDermott JE - Search Results

1

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth.

Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS. Bernstein HC, et al. Among authors: mcdermott je. mBio. 2016 Jul 26;7(4):e00949-16. doi: 10.1128/mBio.00949-16. mBio. 2016. PMID: 27460798 Free PMC article.

2

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.

McDermott JE, Oehmen CS, McCue LA, Hill E, Choi DM, Stöckel J, Liberton M, Pakrasi HB, Sherman LA. McDermott JE, et al. Mol Biosyst. 2011 Aug;7(8):2407-18. doi: 10.1039/c1mb05006k. Epub 2011 Jun 23. Mol Biosyst. 2011. PMID: 21698331

3

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.

Shi T, Niepel M, McDermott JE, Gao Y, Nicora CD, Chrisler WB, Markillie LM, Petyuk VA, Smith RD, Rodland KD, Sorger PK, Qian WJ, Wiley HS. Shi T, et al. Among authors: mcdermott je. Sci Signal. 2016 Jul 12;9(436):rs6. doi: 10.1126/scisignal.aaf0891. Sci Signal. 2016. PMID: 27405981 Free PMC article.

4

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS. McClure RS, et al. Among authors: mcdermott je. Nucleic Acids Res. 2016 Oct 14;44(18):8810-8825. doi: 10.1093/nar/gkw737. Epub 2016 Aug 27. Nucleic Acids Res. 2016. PMID: 27568004 Free PMC article.

5

Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

Mitchell HD, Markillie LM, Chrisler WB, Gaffrey MJ, Hu D, Szymanski CJ, Xie Y, Melby ES, Dohnalkova A, Taylor RC, Grate EK, Cooley SK, McDermott JE, Heredia-Langner A, Orr G. Mitchell HD, et al. Among authors: mcdermott je. ACS Nano. 2016 Nov 22;10(11):10173-10185. doi: 10.1021/acsnano.6b05452. Epub 2016 Oct 31. ACS Nano. 2016. PMID: 27788331

6

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS. McClure RS, et al. Among authors: mcdermott je. ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24. ISME J. 2018. PMID: 29795448 Free PMC article.

7

Improving network inference algorithms using resampling methods.

Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE. Colby SM, et al. Among authors: mcdermott je. BMC Bioinformatics. 2018 Oct 12;19(1):376. doi: 10.1186/s12859-018-2402-0. BMC Bioinformatics. 2018. PMID: 30314469 Free PMC article.

8

Unified feature association networks through integration of transcriptomic and proteomic data.

McClure RS, Wendler JP, Adkins JN, Swanstrom J, Baric R, Kaiser BLD, Oxford KL, Waters KM, McDermott JE. McClure RS, et al. Among authors: mcdermott je. PLoS Comput Biol. 2019 Sep 17;15(9):e1007241. doi: 10.1371/journal.pcbi.1007241. eCollection 2019 Sep. PLoS Comput Biol. 2019. PMID: 31527878 Free PMC article.

9

Hi-C metagenome sequencing reveals soil phage-host interactions.

Wu R, Davison MR, Nelson WC, Smith ML, Lipton MS, Jansson JK, McClure RS, McDermott JE, Hofmockel KS. Wu R, et al. Among authors: mcdermott je. Nat Commun. 2023 Nov 23;14(1):7666. doi: 10.1038/s41467-023-42967-z. Nat Commun. 2023. PMID: 37996432 Free PMC article.

10

Molecular-Level Dysregulation of Insulin Pathways and Inflammatory Processes in Peripheral Blood Mononuclear Cells by Circadian Misalignment.

McDermott JE, Jacobs JM, Merrill NJ, Mitchell HD, Arshad OA, McClure R, Teeguarden J, Gajula RP, Porter KI, Satterfield BC, Lundholm KR, Skene DJ, Gaddameedhi S, Dongen HPAV. McDermott JE, et al. J Proteome Res. 2024 May 3;23(5):1547-1558. doi: 10.1021/acs.jproteome.3c00418. Epub 2024 Apr 15. J Proteome Res. 2024. PMID: 38619923

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