McCubbin T - Search Results

1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth-defence trade-off.

Colombié S, Prigent S, Cassan C, Hilbert-Masson G, Renaud C, Dell'Aversana E, Carillo P, Moing A, Beaumont C, Beauvoit B, McCubbin T, Nielsen LK, Gibon Y. Colombié S, et al. Among authors: mccubbin t. Plant J. 2023 Nov;116(3):786-803. doi: 10.1111/tpj.16409. Epub 2023 Aug 2. Plant J. 2023. PMID: 37531405

2

Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimerase.

Gonzalez-Garcia RA, McCubbin T, Wille A, Plan M, Nielsen LK, Marcellin E. Gonzalez-Garcia RA, et al. Among authors: mccubbin t. Microb Cell Fact. 2017 Jul 17;16(1):121. doi: 10.1186/s12934-017-0735-4. Microb Cell Fact. 2017. PMID: 28716098 Free PMC article.

3

Genome-scale model guided design of Propionibacterium for enhanced propionic acid production.

Navone L, McCubbin T, Gonzalez-Garcia RA, Nielsen LK, Marcellin E. Navone L, et al. Among authors: mccubbin t. Metab Eng Commun. 2017 Nov 24;6:1-12. doi: 10.1016/j.meteno.2017.11.001. eCollection 2018 Jun. Metab Eng Commun. 2017. PMID: 29255672 Free PMC article.

4

Engineering Escherichia coli for propionic acid production through the Wood-Werkman cycle.

Gonzalez-Garcia RA, McCubbin T, Turner MS, Nielsen LK, Marcellin E. Gonzalez-Garcia RA, et al. Among authors: mccubbin t. Biotechnol Bioeng. 2020 Jan;117(1):167-183. doi: 10.1002/bit.27182. Epub 2019 Oct 16. Biotechnol Bioeng. 2020. PMID: 31556457

5

A Pan-Genome Guided Metabolic Network Reconstruction of Five Propionibacterium Species Reveals Extensive Metabolic Diversity.

McCubbin T, Gonzalez-Garcia RA, Palfreyman RW, Stowers C, Nielsen LK, Marcellin E. McCubbin T, et al. Genes (Basel). 2020 Sep 23;11(10):1115. doi: 10.3390/genes11101115. Genes (Basel). 2020. PMID: 32977700 Free PMC article.

6

multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.

Mahamkali V, McCubbin T, Beber ME, Noor E, Marcellin E, Nielsen LK. Mahamkali V, et al. Among authors: mccubbin t. Bioinformatics. 2021 Sep 29;37(18):3064-3066. doi: 10.1093/bioinformatics/btab151. Bioinformatics. 2021. PMID: 33682879 Free PMC article.

7

Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO₂ and H₂ enhances growth rates in chemostat and unravels proteome and metabolome alterations.

Heffernan J, Garcia Gonzalez RA, Mahamkali V, McCubbin T, Daygon D, Liu L, Palfreyman R, Harris A, Koepke M, Valgepea K, Nielsen LK, Marcellin E. Heffernan J, et al. Among authors: mccubbin t. Microb Biotechnol. 2024 Apr;17(4):e14452. doi: 10.1111/1751-7915.14452. Microb Biotechnol. 2024. PMID: 38568755 Free PMC article.

8

Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network.

Lee RG, Rudler DL, Raven SA, Peng L, Chopin A, Moh ESX, McCubbin T, Siira SJ, Fagan SV, DeBono NJ, Stentenbach M, Browne J, Rackham FF, Li J, Simpson KJ, Marcellin E, Packer NH, Reid GE, Padman BS, Rackham O, Filipovska A. Lee RG, et al. Among authors: mccubbin t. Nat Cell Biol. 2024 Jan;26(1):57-71. doi: 10.1038/s41556-023-01297-4. Epub 2023 Dec 21. Nat Cell Biol. 2024. PMID: 38129691

9

Dysregulated energy metabolism impairs chondrocyte function in osteoarthritis.

Wu X, Liyanage C, Plan M, Stark T, McCubbin T, Barrero RA, Batra J, Crawford R, Xiao Y, Prasadam I. Wu X, et al. Among authors: mccubbin t. Osteoarthritis Cartilage. 2023 May;31(5):613-626. doi: 10.1016/j.joca.2022.11.004. Epub 2022 Nov 19. Osteoarthritis Cartilage. 2023. PMID: 36410637 Free article.

10

A Genome-Scale Metabolic Model of Methanoperedens nitroreducens: Assessing Bioenergetics and Thermodynamic Feasibility.

He B, Cai C, McCubbin T, Muriel JC, Sonnenschein N, Hu S, Yuan Z, Marcellin E. He B, et al. Among authors: mccubbin t. Metabolites. 2022 Mar 31;12(4):314. doi: 10.3390/metabo12040314. Metabolites. 2022. PMID: 35448501 Free PMC article.

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