McCaffrey J - Search Results

1

Customized optical mapping by CRISPR-Cas9 mediated DNA labeling with multiple sgRNAs.

Abid HZ, Young E, McCaffrey J, Raseley K, Varapula D, Wang HY, Piazza D, Mell J, Xiao M. Abid HZ, et al. Among authors: mccaffrey j. Nucleic Acids Res. 2021 Jan 25;49(2):e8. doi: 10.1093/nar/gkaa1088. Nucleic Acids Res. 2021. PMID: 33231685 Free PMC article.

2

CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.

McCaffrey J, Sibert J, Zhang B, Zhang Y, Hu W, Riethman H, Xiao M. McCaffrey J, et al. Nucleic Acids Res. 2016 Jan 29;44(2):e11. doi: 10.1093/nar/gkv878. Epub 2015 Oct 19. Nucleic Acids Res. 2016. PMID: 26481349 Free PMC article.

3

High-throughput single-molecule mapping links subtelomeric variants and long-range haplotypes with specific telomeres.

Young E, Pastor S, Rajagopalan R, McCaffrey J, Sibert J, Mak ACY, Kwok PY, Riethman H, Xiao M. Young E, et al. Among authors: mccaffrey j. Nucleic Acids Res. 2017 May 19;45(9):e73. doi: 10.1093/nar/gkx017. Nucleic Acids Res. 2017. PMID: 28180280 Free PMC article.

4

Single-molecule analysis of subtelomeres and telomeres in Alternative Lengthening of Telomeres (ALT) cells.

Abid HZ, McCaffrey J, Raseley K, Young E, Lassahn K, Varapula D, Riethman H, Xiao M. Abid HZ, et al. Among authors: mccaffrey j. BMC Genomics. 2020 Jul 15;21(1):485. doi: 10.1186/s12864-020-06901-7. BMC Genomics. 2020. PMID: 32669102 Free PMC article.

5

High-throughput single-molecule telomere characterization.

McCaffrey J, Young E, Lassahn K, Sibert J, Pastor S, Riethman H, Xiao M. McCaffrey J, et al. Genome Res. 2017 Nov;27(11):1904-1915. doi: 10.1101/gr.222422.117. Epub 2017 Oct 12. Genome Res. 2017. PMID: 29025896 Free PMC article.

6

Genome maps across 26 human populations reveal population-specific patterns of structural variation.

Levy-Sakin M, Pastor S, Mostovoy Y, Li L, Leung AKY, McCaffrey J, Young E, Lam ET, Hastie AR, Wong KHY, Chung CYL, Ma W, Sibert J, Rajagopalan R, Jin N, Chow EYC, Chu C, Poon A, Lin C, Naguib A, Wang WP, Cao H, Chan TF, Yip KY, Xiao M, Kwok PY. Levy-Sakin M, et al. Among authors: mccaffrey j. Nat Commun. 2019 Mar 4;10(1):1025. doi: 10.1038/s41467-019-08992-7. Nat Commun. 2019. PMID: 30833565 Free PMC article.

7

Genome rearrangements induce biofilm formation in Escherichia coli C - an old model organism with a new application in biofilm research.

Król JE, Hall DC Jr, Balashov S, Pastor S, Sibert J, McCaffrey J, Lang S, Ehrlich RL, Earl J, Mell JC, Xiao M, Ehrlich GD. Król JE, et al. Among authors: mccaffrey j. BMC Genomics. 2019 Oct 22;20(1):767. doi: 10.1186/s12864-019-6165-4. BMC Genomics. 2019. PMID: 31640553 Free PMC article.

8

The Driver of Extreme Human-Specific Olduvai Repeat Expansion Remains Highly Active in the Human Genome.

Heft IE, Mostovoy Y, Levy-Sakin M, Ma W, Stevens AJ, Pastor S, McCaffrey J, Boffelli D, Martin DI, Xiao M, Kennedy MA, Kwok PY, Sikela JM. Heft IE, et al. Among authors: mccaffrey j. Genetics. 2020 Jan;214(1):179-191. doi: 10.1534/genetics.119.302782. Epub 2019 Nov 21. Genetics. 2020. PMID: 31754017 Free PMC article.

9

[No title available]

[No authors listed] [No authors listed] PMID: 33954649

10

Assessment of biological organ age using molecular pathology in pre-transplant kidney biopsies.

Zhang R, Trotter PB, McCaffrey J, Fitzroy R, Trivioli G, Stewart BJ, Ferdinand JR, Loudon KW, Riding A, West J, Ferro A, Clatworthy MR. Zhang R, et al. Among authors: mccaffrey j. Kidney Int. 2024 Apr 29:S0085-2538(24)00311-9. doi: 10.1016/j.kint.2024.03.028. Online ahead of print. Kidney Int. 2024. PMID: 38692408 Free article.

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