May D - Search Results

1

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD. Blank C, et al. Among authors: may d. Proteomes. 2018 Jan 31;6(1):7. doi: 10.3390/proteomes6010007. Proteomes. 2018. PMID: 29385081 Free PMC article.

Studying translated gene products (proteins) and comparing metaproteomic profiles may elucidate how microbiomes respond to specific environmental stimuli, and interact with host organisms. ...The modular workflows encompass the core requirements of metaproteomic informatic …

Studying translated gene products (proteins) and comparing metaproteomic profiles may elucidate how microbiomes respond to specific e …

2

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data.

Riffle M, May DH, Timmins-Schiffman E, Mikan MP, Jaschob D, Noble WS, Nunn BL. Riffle M, et al. Among authors: may dh. Proteomes. 2017 Dec 27;6(1):2. doi: 10.3390/proteomes6010002. Proteomes. 2017. PMID: 29280960 Free PMC article.

3

An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing.

May DH, Timmins-Schiffman E, Mikan MP, Harvey HR, Borenstein E, Nunn BL, Noble WS. May DH, et al. J Proteome Res. 2016 Aug 5;15(8):2697-705. doi: 10.1021/acs.jproteome.6b00239. Epub 2016 Jul 19. J Proteome Res. 2016. PMID: 27396978 Free PMC article.

4

Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi.

Krayushkina D, Timmins-Schiffman E, Faux J, May DH, Riffle M, Harvey HR, Nunn BL. Krayushkina D, et al. Among authors: may dh. Sci Data. 2019 Dec 3;6(1):303. doi: 10.1038/s41597-019-0308-y. Sci Data. 2019. PMID: 31796751 Free PMC article.

5

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes.

Mikan MP, Harvey HR, Timmins-Schiffman E, Riffle M, May DH, Salter I, Noble WS, Nunn BL. Mikan MP, et al. ISME J. 2020 Jan;14(1):39-52. doi: 10.1038/s41396-019-0503-z. Epub 2019 Sep 6. ISME J. 2020. PMID: 31492961 Free PMC article.

6

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns.

Timmins-Schiffman E, May DH, Mikan M, Riffle M, Frazar C, Harvey HR, Noble WS, Nunn BL. Timmins-Schiffman E, et al. ISME J. 2017 Feb;11(2):309-314. doi: 10.1038/ismej.2016.132. Epub 2016 Nov 8. ISME J. 2017. PMID: 27824341 Free PMC article. No abstract available.

7

Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach.

Pan S, Hullar MAJ, Lai LA, Peng H, May DH, Noble WS, Raftery D, Navarro SL, Neuhouser ML, Lampe PD, Lampe JW, Chen R. Pan S, et al. Among authors: may dh. Microorganisms. 2020 Mar 7;8(3):379. doi: 10.3390/microorganisms8030379. Microorganisms. 2020. PMID: 32156071 Free PMC article.

8

Detecting Modifications in Proteomics Experiments with Param-Medic.

May DH, Tamura K, Noble WS. May DH, et al. J Proteome Res. 2019 Apr 5;18(4):1902-1906. doi: 10.1021/acs.jproteome.8b00954. Epub 2019 Mar 5. J Proteome Res. 2019. PMID: 30714740 Free PMC article.

9

A platform for accurate mass and time analyses of mass spectrometry data.

May D, Fitzgibbon M, Liu Y, Holzman T, Eng J, Kemp CJ, Whiteaker J, Paulovich A, McIntosh M. May D, et al. J Proteome Res. 2007 Jul;6(7):2685-94. doi: 10.1021/pr070146y. Epub 2007 Jun 9. J Proteome Res. 2007. PMID: 17559252

10

Protein alterations associated with pancreatic cancer and chronic pancreatitis found in human plasma using global quantitative proteomics profiling.

Pan S, Chen R, Crispin DA, May D, Stevens T, McIntosh MW, Bronner MP, Ziogas A, Anton-Culver H, Brentnall TA. Pan S, et al. Among authors: may d. J Proteome Res. 2011 May 6;10(5):2359-76. doi: 10.1021/pr101148r. Epub 2011 Mar 28. J Proteome Res. 2011. PMID: 21443201 Free PMC article.

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