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Long non-coding RNAs: definitions, functions, challenges and recommendations.
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, Kanduri C, Kapranov P, Lawrence JB, Lee JT, Mendell JT, Mercer TR, Moore KJ, Nakagawa S, Rinn JL, Spector DL, Ulitsky I, Wan Y, Wilusz JE, Wu M. Mattick JS, et al. Nat Rev Mol Cell Biol. 2023 Jun;24(6):430-447. doi: 10.1038/s41580-022-00566-8. Epub 2023 Jan 3. Nat Rev Mol Cell Biol. 2023. PMID: 36596869 Review.
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, Mattick JS. Frith MC, et al. Among authors: mattick js. RNA Biol. 2006 Jan-Mar;3(1):40-8. doi: 10.4161/rna.3.1.2789. Epub 2006 Apr 3. RNA Biol. 2006. PMID: 17114936
RNAdb 2.0--an expanded database of mammalian non-coding RNAs.
Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS. Pang KC, et al. Among authors: mattick js. Nucleic Acids Res. 2007 Jan;35(Database issue):D178-82. doi: 10.1093/nar/gkl926. Epub 2006 Dec 1. Nucleic Acids Res. 2007. PMID: 17145715 Free PMC article.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium; Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foiss… See abstract for full author list ➔ ENCODE Project Consortium, et al. Among authors: mattick js. Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874. Nature. 2007. PMID: 17571346 Free PMC article.
Specific expression of long noncoding RNAs in the mouse brain.
Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Mercer TR, et al. Among authors: mattick js. Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):716-21. doi: 10.1073/pnas.0706729105. Epub 2008 Jan 9. Proc Natl Acad Sci U S A. 2008. PMID: 18184812 Free PMC article.
The eukaryotic genome as an RNA machine.
Amaral PP, Dinger ME, Mercer TR, Mattick JS. Amaral PP, et al. Among authors: mattick js. Science. 2008 Mar 28;319(5871):1787-9. doi: 10.1126/science.1155472. Science. 2008. PMID: 18369136
RNAs as extracellular signaling molecules.
Dinger ME, Mercer TR, Mattick JS. Dinger ME, et al. Among authors: mattick js. J Mol Endocrinol. 2008 Apr;40(4):151-9. doi: 10.1677/JME-07-0160. J Mol Endocrinol. 2008. PMID: 18372404 Review.
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS. Dinger ME, et al. Among authors: mattick js. Genome Res. 2008 Sep;18(9):1433-45. doi: 10.1101/gr.078378.108. Epub 2008 Jun 18. Genome Res. 2008. PMID: 18562676 Free PMC article.
NRED: a database of long noncoding RNA expression.
Dinger ME, Pang KC, Mercer TR, Crowe ML, Grimmond SM, Mattick JS. Dinger ME, et al. Among authors: mattick js. Nucleic Acids Res. 2009 Jan;37(Database issue):D122-6. doi: 10.1093/nar/gkn617. Epub 2008 Oct 1. Nucleic Acids Res. 2009. PMID: 18829717 Free PMC article.
303 results