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Centre-specific bacterial pathogen typing affects infection-control decision making.
Microb Genom. 2021 Aug;7(8):000612. doi: 10.1099/mgen.0.000612.
Microb Genom. 2021.
PMID: 34356004
Free PMC article.
Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller.
van der Putten BCL, Matamoros S, Mende DR, Scholl ER, Consortium C, Schultsz C.
van der Putten BCL, et al.
Int J Syst Evol Microbiol. 2021 Feb;71(2):004609. doi: 10.1099/ijsem.0.004609.
Int J Syst Evol Microbiol. 2021.
PMID: 33406029
Free PMC article.
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Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning.
Pataki BÁ, Matamoros S, van der Putten BCL, Remondini D, Giampieri E, Aytan-Aktug D, Hendriksen RS, Lund O, Csabai I, Schultsz C; SPS COMPARE ML-AMR group.
Pataki BÁ, et al.
Sci Rep. 2020 Sep 14;10(1):15026. doi: 10.1038/s41598-020-71693-5.
Sci Rep. 2020.
PMID: 32929164
Free PMC article.
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A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.
Carbo EC, Mourik K, Boers SA, Munnink BO, Nieuwenhuijse D, Jonges M, Welkers MRA, Matamoros S, van Harinxma Thoe Slooten J, Kraakman MEM, Karelioti E, van der Meer D, Veldkamp KE, Kroes ACM, Sidorov I, de Vries JJC.
Carbo EC, et al.
Eur J Clin Microbiol Infect Dis. 2023 Jun;42(6):701-713. doi: 10.1007/s10096-023-04590-0. Epub 2023 Apr 5.
Eur J Clin Microbiol Infect Dis. 2023.
PMID: 37017810
Free PMC article.
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Concordance between culture, Molecular Culture and Illumina 16S rRNA gene amplicon sequencing of bone and ulcer bed biopsies in people with diabetic foot osteomyelitis.
Gramberg MCTT, Knippers C, Lagrand RS, van Hattem JM, de Goffau MC, Budding Budding AE, Davids M, Matamoros S, Nieuwdorp M, de Groot V, Heijer MD, Sabelis LWE, Peters EJG.
Gramberg MCTT, et al.
BMC Infect Dis. 2023 Aug 1;23(1):505. doi: 10.1186/s12879-023-08472-w.
BMC Infect Dis. 2023.
PMID: 37525143
Free PMC article.
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Genome-wide association reveals host-specific genomic traits in Escherichia coli.
Tiwari SK, van der Putten BCL, Fuchs TM, Vinh TN, Bootsma M, Oldenkamp R, La Ragione R, Matamoros S, Hoa NT, Berens C, Leng J, Álvarez J, Ferrandis-Vila M, Ritchie JM, Fruth A, Schwarz S, Domínguez L, Ugarte-Ruiz M, Bethe A, Huber C, Johanns V, Stamm I, Wieler LH, Ewers C, Fivian-Hughes A, Schmidt H, Menge C, Semmler T, Schultsz C.
Tiwari SK, et al.
BMC Biol. 2023 Apr 11;21(1):76. doi: 10.1186/s12915-023-01562-w.
BMC Biol. 2023.
PMID: 37038177
Free PMC article.
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Comparison of fast Fourier transform infrared spectroscopy biotyping with whole genome sequencing-based genotyping in common nosocomial pathogens.
Teng ASJ, Habermehl PE, van Houdt R, de Jong MD, van Mansfeld R, Matamoros SPF, Spijkerman IJB, van Meer MPA, Visser CE.
Teng ASJ, et al. Among authors: matamoros spf.
Anal Bioanal Chem. 2022 Oct;414(24):7179-7189. doi: 10.1007/s00216-022-04270-6. Epub 2022 Aug 13.
Anal Bioanal Chem. 2022.
PMID: 35962141
Free PMC article.
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