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PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.
Front Immunol. 2022 May 10;13:878762. doi: 10.3389/fimmu.2022.878762. eCollection 2022.
Front Immunol. 2022.
PMID: 35619705
Free PMC article.
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Renaud N, Geng C, Georgievska S, Ambrosetti F, Ridder L, Marzella DF, Réau MF, Bonvin AMJJ, Xue LC.
Renaud N, et al. Among authors: marzella df.
Nat Commun. 2021 Dec 3;12(1):7068. doi: 10.1038/s41467-021-27396-0.
Nat Commun. 2021.
PMID: 34862392
Free PMC article.
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The PANDORA Software for Anchor-Restrained Peptide:MHC Modeling.
Marzella DF, Crocioni G, Parizi FM, Xue LC.
Marzella DF, et al.
Methods Mol Biol. 2023;2673:251-271. doi: 10.1007/978-1-0716-3239-0_18.
Methods Mol Biol. 2023.
PMID: 37258920
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PANDORA v2.0: Benchmarking peptide-MHC II models and software improvements.
Parizi FM, Marzella DF, Ramakrishnan G, 't Hoen PAC, Karimi-Jafari MH, Xue LC.
Parizi FM, et al. Among authors: marzella df.
Front Immunol. 2023 Dec 8;14:1285899. doi: 10.3389/fimmu.2023.1285899. eCollection 2023.
Front Immunol. 2023.
PMID: 38143769
Free PMC article.
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