Martins Dos Santos VAP - Search Results

1

Computational Approaches for Peroxisomal Protein Localization.

Anteghini M, Martins Dos Santos VAP. Anteghini M, et al. Among authors: martins dos santos vap. Methods Mol Biol. 2023;2643:405-411. doi: 10.1007/978-1-0716-3048-8_29. Methods Mol Biol. 2023. PMID: 36952202

2

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction.

Fang K, Zhao H, Sun C, Lam CM, Chang S, Zhang K, Panda G, Godinho M, Martins dos Santos VA, Wang J. Fang K, et al. BMC Syst Biol. 2011 May 25;5:83. doi: 10.1186/1752-0509-5-83. BMC Syst Biol. 2011. PMID: 21609491 Free PMC article.

3

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lünsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Pühler A, Timmis KN. Golyshin PN, et al. J Biotechnol. 2003 Dec 19;106(2-3):215-20. doi: 10.1016/j.jbiotec.2003.07.013. J Biotechnol. 2003. PMID: 14651863 Review.

4

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.

Belda E, van Heck RG, José Lopez-Sanchez M, Cruveiller S, Barbe V, Fraser C, Klenk HP, Petersen J, Morgat A, Nikel PI, Vallenet D, Rouy Z, Sekowska A, Martins Dos Santos VA, de Lorenzo V, Danchin A, Médigue C. Belda E, et al. Environ Microbiol. 2016 Oct;18(10):3403-3424. doi: 10.1111/1462-2920.13230. Epub 2016 Apr 28. Environ Microbiol. 2016. PMID: 26913973

5

Towards understanding Pseudomonas aeruginosa burn wound infections by profiling gene expression.

Bielecki P, Glik J, Kawecki M, Martins dos Santos VA. Bielecki P, et al. Biotechnol Lett. 2008 May;30(5):777-90. doi: 10.1007/s10529-007-9620-2. Epub 2007 Dec 26. Biotechnol Lett. 2008. PMID: 18158583 Review.

6

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31. PLoS Comput Biol. 2011. PMID: 21483480 Free PMC article.

7

Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites.

Bielecki P, Komor U, Bielecka A, Müsken M, Puchałka J, Pletz MW, Ballmann M, Martins dos Santos VA, Weiss S, Häussler S. Bielecki P, et al. Environ Microbiol. 2013 Feb;15(2):570-87. doi: 10.1111/1462-2920.12024. Epub 2012 Nov 12. Environ Microbiol. 2013. PMID: 23145907

8

Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach.

Koutinas M, Kiparissides A, Silva-Rocha R, Lam MC, Martins Dos Santos VA, de Lorenzo V, Pistikopoulos EN, Mantalaris A. Koutinas M, et al. Metab Eng. 2011 Jul;13(4):401-13. doi: 10.1016/j.ymben.2011.02.001. Epub 2011 Feb 16. Metab Eng. 2011. PMID: 21315172 Free article.

9

Genomic and mechanistic insights into the biodegradation of organic pollutants.

Pieper DH, Martins dos Santos VA, Golyshin PN. Pieper DH, et al. Curr Opin Biotechnol. 2004 Jun;15(3):215-24. doi: 10.1016/j.copbio.2004.03.008. Curr Opin Biotechnol. 2004. PMID: 15193329 Review.

10

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM. Nelson KE, et al. Environ Microbiol. 2002 Dec;4(12):799-808. doi: 10.1046/j.1462-2920.2002.00366.x. Environ Microbiol. 2002. PMID: 12534463

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