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Transfer learning for drug-target interaction prediction.
Dalkıran A, Atakan A, Rifaioğlu AS, Martin MJ, Atalay RÇ, Acar AC, Doğan T, Atalay V. Dalkıran A, et al. Among authors: martin mj. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i103-i110. doi: 10.1093/bioinformatics/btad234. Bioinformatics. 2023. PMID: 37387156 Free PMC article.
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
Searching and Navigating UniProt Databases.
Lussi YC, Magrane M, Martin MJ, Orchard S; UniProt Consortium. Lussi YC, et al. Among authors: martin mj. Curr Protoc. 2023 Mar;3(3):e700. doi: 10.1002/cpz1.700. Curr Protoc. 2023. PMID: 36912607
The Quest for Orthologs orthology benchmark service in 2022.
Nevers Y, Jones TEM, Jyothi D, Yates B, Ferret M, Portell-Silva L, Codo L, Cosentino S, Marcet-Houben M, Vlasova A, Poidevin L, Kress A, Hickman M, Persson E, Piližota I, Guijarro-Clarke C; OpenEBench team the Quest for Orthologs Consortium; Iwasaki W, Lecompte O, Sonnhammer E, Roos DS, Gabaldón T, Thybert D, Thomas PD, Hu Y, Emms DM, Bruford E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A. Nevers Y, et al. Among authors: martin mj. Nucleic Acids Res. 2022 Jul 5;50(W1):W623-W632. doi: 10.1093/nar/gkac330. Nucleic Acids Res. 2022. PMID: 35552456 Free PMC article.
Perspectives on tracking data reuse across biodata resources.
Ross KE, Bastian FB, Buys M, Cook CE, D'Eustachio P, Harrison M, Hermjakob H, Li D, Lord P, Natale DA, Peters B, Sternberg PW, Su AI, Thakur M, Thomas PD, Bateman A; and the UniProt Consortium. Ross KE, et al. Bioinform Adv. 2024 Apr 25;4(1):vbae057. doi: 10.1093/bioadv/vbae057. eCollection 2024. Bioinform Adv. 2024. PMID: 38721398 Free PMC article.
Genome-wide CRISPR screens identify the YAP/TEAD axis as a driver of persister cells in EGFR mutant lung cancer.
Pfeifer M, Brammeld JS, Price S, Pilling J, Bhavsar D, Farcas A, Bateson J, Sundarrajan A, Miragaia RJ, Guan N, Arnold S, Tariq L, Grondine M, Talbot S, Guerriero ML, O'Neill DJ, Young J, Company C, Dunn S, Thorpe H, Martin MJ, Maratea K, Barrell D, Ahdesmaki M, Mettetal JT; Functional Genomics Centre; Brownell J, McDermott U. Pfeifer M, et al. Among authors: martin mj. Commun Biol. 2024 Apr 24;7(1):497. doi: 10.1038/s42003-024-06190-w. Commun Biol. 2024. PMID: 38658677 Free PMC article.
New voices for a better society.
Diem SJ, Bayon BL, Mahmoud H, Garcia-Cazarin ML, Martin MJ, Rittschof CC, Silveyra P, Boland-Reeves A, Najib D, Wasson F. Diem SJ, et al. Among authors: martin mj. Proc Natl Acad Sci U S A. 2024 Apr 30;121(18):e2404579121. doi: 10.1073/pnas.2404579121. Epub 2024 Apr 24. Proc Natl Acad Sci U S A. 2024. PMID: 38657043 Free PMC article. No abstract available.
Non-Binary Trauma Patients: Delineating a Vulnerable, At-Risk Population.
Hambrecht A, Schellenberg M, Owattanapanich N, Boyle KA, Ugarte C, Ambrose C, Matsushima K, Martin MJ, Inaba K. Hambrecht A, et al. Among authors: martin mj. Am Surg. 2024 Apr 23:31348241248786. doi: 10.1177/00031348241248786. Online ahead of print. Am Surg. 2024. PMID: 38654486
982 results