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The transcriptional landscape of Shh medulloblastoma.
Skowron P, Farooq H, Cavalli FMG, Morrissy AS, Ly M, Hendrikse LD, Wang EY, Djambazian H, Zhu H, Mungall KL, Trinh QM, Zheng T, Dai S, Stucklin ASG, Vladoiu MC, Fong V, Holgado BL, Nor C, Wu X, Abd-Rabbo D, Bérubé P, Wang YC, Luu B, Suarez RA, Rastan A, Gillmor AH, Lee JJY, Zhang XY, Daniels C, Dirks P, Malkin D, Bouffet E, Tabori U, Loukides J, Doz FP, Bourdeaut F, Delattre OO, Masliah-Planchon J, Ayrault O, Kim SK, Meyronet D, Grajkowska WA, Carlotti CG, de Torres C, Mora J, Eberhart CG, Van Meir EG, Kumabe T, French PJ, Kros JM, Jabado N, Lach B, Pollack IF, Hamilton RL, Rao AAN, Giannini C, Olson JM, Bognár L, Klekner A, Zitterbart K, Phillips JJ, Thompson RC, Cooper MK, Rubin JB, Liau LM, Garami M, Hauser P, Li KKW, Ng HK, Poon WS, Yancey Gillespie G, Chan JA, Jung S, McLendon RE, Thompson EM, Zagzag D, Vibhakar R, Ra YS, Garre ML, Schüller U, Shofuda T, Faria CC, López-Aguilar E, Zadeh G, Hui CC, Ramaswamy V, Bailey SD, Jones SJ, Mungall AJ, Moore RA, Calarco JA, Stein LD, Bader GD, Reimand J, Ragoussis J, Weiss WA, Marra MA, Suzuki H, Taylor MD. Skowron P, et al. Among authors: marra ma. Nat Commun. 2021 Mar 19;12(1):1749. doi: 10.1038/s41467-021-21883-0. Nat Commun. 2021. PMID: 33741928 Free PMC article.
Assembly of fingerprint contigs: parallelized FPC.
Ness SR, Terpstra W, Krzywinski M, Marra MA, Jones SJ. Ness SR, et al. Among authors: marra ma. Bioinformatics. 2002 Mar;18(3):484-5. doi: 10.1093/bioinformatics/18.3.484. Bioinformatics. 2002. PMID: 11934749
Assessment of SAGE in transcript identification.
Pleasance ED, Marra MA, Jones SJ. Pleasance ED, et al. Among authors: marra ma. Genome Res. 2003 Jun;13(6A):1203-15. doi: 10.1101/gr.873003. Epub 2003 May 12. Genome Res. 2003. PMID: 12743019 Free PMC article.
Sequence biases in large scale gene expression profiling data.
Siddiqui AS, Delaney AD, Schnerch A, Griffith OL, Jones SJ, Marra MA. Siddiqui AS, et al. Among authors: marra ma. Nucleic Acids Res. 2006 Jul 13;34(12):e83. doi: 10.1093/nar/gkl404. Nucleic Acids Res. 2006. PMID: 16840527 Free PMC article.
566 results