Markin A - Search Results

1

Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential.

Markin A, Ciacci Zanella G, Arendsee ZW, Zhang J, Krueger KM, Gauger PC, Vincent Baker AL, Anderson TK. Markin A, et al. PLoS Pathog. 2023 Jul 27;19(7):e1011476. doi: 10.1371/journal.ppat.1011476. eCollection 2023 Jul. PLoS Pathog. 2023. PMID: 37498825 Free PMC article.

2

Consensus of All Solutions for Intractable Phylogenetic Tree Inference.

Tabaszewski P, Gorecki P, Markin A, Anderson T, Eulenstein O. Tabaszewski P, et al. Among authors: markin a. IEEE/ACM Trans Comput Biol Bioinform. 2021 Jan-Feb;18(1):149-161. doi: 10.1109/TCBB.2019.2947051. Epub 2021 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 31613775

3

octoFLUshow: an Interactive Tool Describing Spatial and Temporal Trends in the Genetic Diversity of Influenza A Virus in U.S. Swine.

Arendsee ZW, Chang J, Hufnagel DE, Markin A, Janas-Martindale A, Vincent AL, Anderson TK. Arendsee ZW, et al. Among authors: markin a. Microbiol Resour Announc. 2021 Dec 16;10(50):e0108121. doi: 10.1128/MRA.01081-21. Epub 2021 Dec 16. Microbiol Resour Announc. 2021. PMID: 34913720 Free PMC article.

4

RF-Net 2: fast inference of virus reassortment and hybridization networks.

Markin A, Wagle S, Anderson TK, Eulenstein O. Markin A, et al. Bioinformatics. 2022 Apr 12;38(8):2144-2152. doi: 10.1093/bioinformatics/btac075. Bioinformatics. 2022. PMID: 35150239 Free PMC article.

5

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny.

Markin A, Wagle S, Grover S, Vincent Baker AL, Eulenstein O, Anderson TK. Markin A, et al. Syst Biol. 2023 Nov 1;72(5):1052-1063. doi: 10.1093/sysbio/syad028. Syst Biol. 2023. PMID: 37208300

6

Phylogenetic diversity statistics for all clades in a phylogeny.

Grover S, Markin A, Anderson TK, Eulenstein O. Grover S, et al. Among authors: markin a. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i177-i184. doi: 10.1093/bioinformatics/btad263. Bioinformatics. 2023. PMID: 37387175 Free PMC article.

7

Asymmetric Cluster-Based Measures for Comparative Phylogenetics.

Wagle S, Markin A, Górecki P, Anderson TK, Eulenstein O. Wagle S, et al. Among authors: markin a. J Comput Biol. 2024 Apr;31(4):312-327. doi: 10.1089/cmb.2023.0338. Epub 2024 Apr 17. J Comput Biol. 2024. PMID: 38634854 Free PMC article.

8

Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model.

Markin A, Eulenstein O. Markin A, et al. Bioinformatics. 2021 Nov 18;37(22):4064-4074. doi: 10.1093/bioinformatics/btab414. Bioinformatics. 2021. PMID: 34048529 Free PMC article.

9

Finding orthologous gene blocks in bacteria: the computational hardness of the problem and novel methods to address it.

Nguyen HN, Markin A, Friedberg I, Eulenstein O. Nguyen HN, et al. Among authors: markin a. Bioinformatics. 2020 Dec 30;36(Suppl_2):i668-i674. doi: 10.1093/bioinformatics/btaa794. Bioinformatics. 2020. PMID: 33381825 Free PMC article.

10

Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming.

Paszek J, Markin A, Górecki P, Eulenstein O. Paszek J, et al. Among authors: markin a. J Comput Biol. 2021 Aug;28(8):758-773. doi: 10.1089/cmb.2021.0011. Epub 2021 Apr 16. J Comput Biol. 2021. PMID: 34125600

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