Markin A - Search Results

1

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny.

Markin A, Wagle S, Grover S, Vincent Baker AL, Eulenstein O, Anderson TK. Markin A, et al. Syst Biol. 2023 Nov 1;72(5):1052-1063. doi: 10.1093/sysbio/syad028. Syst Biol. 2023. PMID: 37208300 Free PMC article.

2

Computing Manhattan Path-Difference Median Trees: A Practical Local Search Approach.

Markin A, Eulenstein O. Markin A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1063-1076. doi: 10.1109/TCBB.2017.2718507. Epub 2017 Jun 22. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 28650824

3

Efficient Local Search for Euclidean Path-Difference Median Trees.

Markin A, Eulenstein O. Markin A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1374-1385. doi: 10.1109/TCBB.2017.2763137. Epub 2017 Oct 16. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29035224

4

Cophenetic Median Trees.

Markin A, Eulenstein O. Markin A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1459-1470. doi: 10.1109/TCBB.2018.2870173. Epub 2018 Sep 13. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 30222583

5

Consensus of All Solutions for Intractable Phylogenetic Tree Inference.

Tabaszewski P, Gorecki P, Markin A, Anderson T, Eulenstein O. Tabaszewski P, et al. Among authors: markin a. IEEE/ACM Trans Comput Biol Bioinform. 2021 Jan-Feb;18(1):149-161. doi: 10.1109/TCBB.2019.2947051. Epub 2021 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 31613775

6

Exact median-tree inference for unrooted reconciliation costs.

Górecki P, Markin A, Eulenstein O. Górecki P, et al. Among authors: markin a. BMC Evol Biol. 2020 Oct 28;20(Suppl 1):136. doi: 10.1186/s12862-020-01700-w. BMC Evol Biol. 2020. PMID: 33115401 Free PMC article.

7

Finding orthologous gene blocks in bacteria: the computational hardness of the problem and novel methods to address it.

Nguyen HN, Markin A, Friedberg I, Eulenstein O. Nguyen HN, et al. Among authors: markin a. Bioinformatics. 2020 Dec 30;36(Suppl_2):i668-i674. doi: 10.1093/bioinformatics/btaa794. Bioinformatics. 2020. PMID: 33381825 Free PMC article.

8

Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model.

Markin A, Eulenstein O. Markin A, et al. Bioinformatics. 2021 Nov 18;37(22):4064-4074. doi: 10.1093/bioinformatics/btab414. Bioinformatics. 2021. PMID: 34048529 Free PMC article.

9

Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming.

Paszek J, Markin A, Górecki P, Eulenstein O. Paszek J, et al. Among authors: markin a. J Comput Biol. 2021 Aug;28(8):758-773. doi: 10.1089/cmb.2021.0011. Epub 2021 Apr 16. J Comput Biol. 2021. PMID: 34125600

10

octoFLUshow: an Interactive Tool Describing Spatial and Temporal Trends in the Genetic Diversity of Influenza A Virus in U.S. Swine.

Arendsee ZW, Chang J, Hufnagel DE, Markin A, Janas-Martindale A, Vincent AL, Anderson TK. Arendsee ZW, et al. Among authors: markin a. Microbiol Resour Announc. 2021 Dec 16;10(50):e0108121. doi: 10.1128/MRA.01081-21. Epub 2021 Dec 16. Microbiol Resour Announc. 2021. PMID: 34913720 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

180 results

Search Page