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Open and reproducible neuroimaging: From study inception to publication.
Niso G, Botvinik-Nezer R, Appelhoff S, De La Vega A, Esteban O, Etzel JA, Finc K, Ganz M, Gau R, Halchenko YO, Herholz P, Karakuzu A, Keator DB, Markiewicz CJ, Maumet C, Pernet CR, Pestilli F, Queder N, Schmitt T, Sójka W, Wagner AS, Whitaker KJ, Rieger JW. Niso G, et al. Among authors: markiewicz cj. Neuroimage. 2022 Nov;263:119623. doi: 10.1016/j.neuroimage.2022.119623. Epub 2022 Sep 12. Neuroimage. 2022. PMID: 36100172 Free PMC article. Review.
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models.
Ciric R, Thompson WH, Lorenz R, Goncalves M, MacNicol EE, Markiewicz CJ, Halchenko YO, Ghosh SS, Gorgolewski KJ, Poldrack RA, Esteban O. Ciric R, et al. Among authors: markiewicz cj. Nat Methods. 2022 Dec;19(12):1568-1571. doi: 10.1038/s41592-022-01681-2. Epub 2022 Dec 1. Nat Methods. 2022. PMID: 36456786 Free PMC article.
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thi… See abstract for full author list ➔ Poldrack RA, et al. Among authors: markiewicz cj. ArXiv [Preprint]. 2024 Jan 9:arXiv:2309.05768v2. ArXiv. 2024. PMID: 37744469 Free PMC article. Preprint.
PyBIDS: Python tools for BIDS datasets.
Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, DuPre E, Wagner A, Tirrell LS, Jas M, Hanke M, Poldrack RA, Esteban O, Appelhoff S, Holdgraf C, Staden I, Thirion B, Kleinschmidt DF, Lee JA, Visconti di Oleggio Castello M, Notter MP, Blair R. Yarkoni T, et al. Among authors: markiewicz cj. J Open Source Softw. 2019;4(40):1294. doi: 10.21105/joss.01294. Epub 2019 Aug 12. J Open Source Softw. 2019. PMID: 32775955 Free PMC article. No abstract available.
In defense of decentralized research data management.
Hanke M, Pestilli F, Wagner AS, Markiewicz CJ, Poline JB, Halchenko YO. Hanke M, et al. Among authors: markiewicz cj. Neuroforum. 2021;27(1):17-25. doi: 10.1515/nf-2020-0037. Epub 2021 Jan 11. Neuroforum. 2021. PMID: 36504549 Free PMC article.
Align with the NMIND consortium for better neuroimaging.
Kiar G, Clucas J, Feczko E, Goncalves M, Jarecka D, Markiewicz CJ, Halchenko YO, Hermosillo R, Li X, Miranda-Dominguez O, Ghosh S, Poldrack RA, Satterthwaite TD, Milham MP, Fair D. Kiar G, et al. Among authors: markiewicz cj. Nat Hum Behav. 2023 Jul;7(7):1027-1028. doi: 10.1038/s41562-023-01647-0. Nat Hum Behav. 2023. PMID: 37386112 Free PMC article. No abstract available.
The OpenNeuro resource for sharing of neuroscience data.
Markiewicz CJ, Gorgolewski KJ, Feingold F, Blair R, Halchenko YO, Miller E, Hardcastle N, Wexler J, Esteban O, Goncavles M, Jwa A, Poldrack R. Markiewicz CJ, et al. Elife. 2021 Oct 18;10:e71774. doi: 10.7554/eLife.71774. Elife. 2021. PMID: 34658334 Free PMC article.
fMRIPrep: a robust preprocessing pipeline for functional MRI.
Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: markiewicz cj. Nat Methods. 2019 Jan;16(1):111-116. doi: 10.1038/s41592-018-0235-4. Epub 2018 Dec 10. Nat Methods. 2019. PMID: 30532080 Free PMC article.
PET-BIDS, an extension to the brain imaging data structure for positron emission tomography.
Norgaard M, Matheson GJ, Hansen HD, Thomas A, Searle G, Rizzo G, Veronese M, Giacomel A, Yaqub M, Tonietto M, Funck T, Gillman A, Boniface H, Routier A, Dalenberg JR, Betthauser T, Feingold F, Markiewicz CJ, Gorgolewski KJ, Blair RW, Appelhoff S, Gau R, Salo T, Niso G, Pernet C, Phillips C, Oostenveld R, Gallezot JD, Carson RE, Knudsen GM, Innis RB, Ganz M. Norgaard M, et al. Among authors: markiewicz cj. Sci Data. 2022 Mar 2;9(1):65. doi: 10.1038/s41597-022-01164-1. Sci Data. 2022. PMID: 35236846 Free PMC article.
19 results