Marie-Nelly H - Search Results

1

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder.

Baudry L, Guiglielmoni N, Marie-Nelly H, Cormier A, Marbouty M, Avia K, Mie YL, Godfroy O, Sterck L, Cock JM, Zimmer C, Coelho SM, Koszul R. Baudry L, et al. Among authors: marie nelly h. Genome Biol. 2020 Jun 18;21(1):148. doi: 10.1186/s13059-020-02041-z. Genome Biol. 2020. PMID: 32552806 Free PMC article.

2

Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures.

Flot JF, Marie-Nelly H, Koszul R. Flot JF, et al. Among authors: marie nelly h. FEBS Lett. 2015 Oct 7;589(20 Pt A):2966-74. doi: 10.1016/j.febslet.2015.04.034. Epub 2015 Apr 29. FEBS Lett. 2015. PMID: 25935414 Free article. Review.

3

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R. Marie-Nelly H, et al. Bioinformatics. 2014 Aug 1;30(15):2105-13. doi: 10.1093/bioinformatics/btu162. Epub 2014 Apr 7. Bioinformatics. 2014. PMID: 24711652 Free article.

4

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R. Marie-Nelly H, et al. Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695. Nat Commun. 2014. PMID: 25517223 Free PMC article.

5

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms.

Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R. Marbouty M, et al. Among authors: marie nelly h. Elife. 2014 Dec 17;3:e03318. doi: 10.7554/eLife.03318. Elife. 2014. PMID: 25517076 Free PMC article.

6

Normalization of a chromosomal contact map.

Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J. Cournac A, et al. BMC Genomics. 2012 Aug 30;13:436. doi: 10.1186/1471-2164-13-436. BMC Genomics. 2012. PMID: 22935139 Free PMC article.

7

A predictive computational model of the dynamic 3D interphase yeast nucleus.

Wong H, Marie-Nelly H, Herbert S, Carrivain P, Blanc H, Koszul R, Fabre E, Zimmer C. Wong H, et al. Among authors: marie nelly h. Curr Biol. 2012 Oct 23;22(20):1881-90. doi: 10.1016/j.cub.2012.07.069. Epub 2012 Aug 30. Curr Biol. 2012. PMID: 22940469 Free article.

8

FISH-quant: automatic counting of transcripts in 3D FISH images.

Mueller F, Senecal A, Tantale K, Marie-Nelly H, Ly N, Collin O, Basyuk E, Bertrand E, Darzacq X, Zimmer C. Mueller F, et al. Among authors: marie nelly h. Nat Methods. 2013 Apr;10(4):277-8. doi: 10.1038/nmeth.2406. Nat Methods. 2013. PMID: 23538861 No abstract available.

9

A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency.

Xie L, Torigoe SE, Xiao J, Mai DH, Li L, Davis FP, Dong P, Marie-Nelly H, Grimm J, Lavis L, Darzacq X, Cattoglio C, Liu Z, Tjian R. Xie L, et al. Among authors: marie nelly h. Genes Dev. 2017 Sep 1;31(17):1795-1808. doi: 10.1101/gad.303321.117. Genes Dev. 2017. PMID: 28982762 Free PMC article.

10

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation.

McSwiggen DT, Hansen AS, Teves SS, Marie-Nelly H, Hao Y, Heckert AB, Umemoto KK, Dugast-Darzacq C, Tjian R, Darzacq X. McSwiggen DT, et al. Among authors: marie nelly h. Elife. 2019 May 7;8:e47098. doi: 10.7554/eLife.47098. Elife. 2019. PMID: 31038454 Free PMC article.

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