Mariano DCB - Search Results

1

Molecular Dynamics Gives New Insights into the Glucose Tolerance and Inhibition Mechanisms on β-Glucosidases.

Costa LSC, Mariano DCB, Rocha REO, Kraml J, Silveira CHD, Liedl KR, de Melo-Minardi RC, Lima LHF. Costa LSC, et al. Among authors: mariano dcb. Molecules. 2019 Sep 4;24(18):3215. doi: 10.3390/molecules24183215. Molecules. 2019. PMID: 31487855 Free PMC article.

2

A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV).

Mariano DCB, Santos LH, Machado KDS, Werhli AV, de Lima LHF, de Melo-Minardi RC. Mariano DCB, et al. Int J Mol Sci. 2019 Jan 15;20(2):333. doi: 10.3390/ijms20020333. Int J Mol Sci. 2019. PMID: 30650542 Free PMC article.

3

Introducing Programming Skills for Life Science Students.

Mariano D, Martins P, Helene Santos L, de Melo-Minardi RC. Mariano D, et al. Biochem Mol Biol Educ. 2019 May;47(3):288-295. doi: 10.1002/bmb.21230. Epub 2019 Mar 12. Biochem Mol Biol Educ. 2019. PMID: 30860646 Free article.

4

Conformational flexibility correlates with glucose tolerance for point mutations in β-glucosidases - a computational study.

Lima LHF, Fernandez-Quintéro ML, Rocha REO, Mariano DCB, de Melo-Minardi RC, Liedl KR. Lima LHF, et al. Among authors: mariano dcb. J Biomol Struct Dyn. 2021 Mar;39(5):1621-1634. doi: 10.1080/07391102.2020.1734484. Epub 2020 Mar 10. J Biomol Struct Dyn. 2021. PMID: 32107974

5

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases.

Mariano D, Pantuza N, Santos LH, Rocha REO, de Lima LHF, Bleicher L, de Melo-Minardi RC. Mariano D, et al. BMC Mol Cell Biol. 2020 Jul 1;21(1):50. doi: 10.1186/s12860-020-00293-y. BMC Mol Cell Biol. 2020. PMID: 32611314 Free PMC article.

6

Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures.

Barroso JRMS, Mariano D, Dias SR, Rocha REO, Santos LH, Nagem RAP, de Melo-Minardi RC. Barroso JRMS, et al. BMC Bioinformatics. 2020 Jul 1;21(1):275. doi: 10.1186/s12859-020-03575-6. BMC Bioinformatics. 2020. PMID: 32611389 Free PMC article.

7

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm.

Martins PM, Santos LH, Mariano D, Queiroz FC, Bastos LL, Gomes IS, Fischer PHC, Rocha REO, Silveira SA, de Lima LHF, de Magalhães MTQ, Oliveira MGA, de Melo-Minardi RC. Martins PM, et al. BMC Bioinformatics. 2021 Jan 2;22(1):1. doi: 10.1186/s12859-020-03881-z. BMC Bioinformatics. 2021. PMID: 33388027 Free PMC article.

8

E-Volve: understanding the impact of mutations in SARS-CoV-2 variants spike protein on antibodies and ACE2 affinity through patterns of chemical interactions at protein interfaces.

Dos Santos VP, Rodrigues A, Dutra G, Bastos L, Mariano D, Mendonça JG, Lobo YJG, Mendes E, Maia G, Machado KDS, Werhli AV, Rocha G, de Lima LHF, de Melo-Minardi R. Dos Santos VP, et al. PeerJ. 2022 Mar 22;10:e13099. doi: 10.7717/peerj.13099. eCollection 2022. PeerJ. 2022. PMID: 35341044 Free PMC article.

9

Thermostabilizing mechanisms of canonical single amino acid substitutions at a GH1 β-glucosidase probed by multiple MD and computational approaches.

Rocha REO, Mariano DCB, Almeida TS, CorrêaCosta LS, Fischer PHC, Santos LH, Caffarena ER, da Silveira CH, Lamp LM, Fernandez-Quintero ML, Liedl KR, de Melo-Minardi RC, de Lima LHF. Rocha REO, et al. Among authors: mariano dcb. Proteins. 2023 Feb;91(2):218-236. doi: 10.1002/prot.26424. Epub 2022 Oct 10. Proteins. 2023. PMID: 36114781

10

An Approach for Engineering Peptides for Competitive Inhibition of the SARS-COV-2 Spike Protein.

de Abreu AP, Carvalho FC, Mariano D, Bastos LL, Silva JRP, de Oliveira LM, de Melo-Minardi RC, Sabino AP. de Abreu AP, et al. Molecules. 2024 Apr 1;29(7):1577. doi: 10.3390/molecules29071577. Molecules. 2024. PMID: 38611856 Free PMC article.

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