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FROGS: Find, Rapidly, OTUs with Galaxy Solution.
Escudié F, Auer L, Bernard M, Mariadassou M, Cauquil L, Vidal K, Maman S, Hernandez-Raquet G, Combes S, Pascal G. Escudié F, et al. Among authors: mariadassou m. Bioinformatics. 2018 Apr 15;34(8):1287-1294. doi: 10.1093/bioinformatics/btx791. Bioinformatics. 2018. PMID: 29228191
Quantitative prediction of genome-wide resource allocation in bacteria.
Goelzer A, Muntel J, Chubukov V, Jules M, Prestel E, Nölker R, Mariadassou M, Aymerich S, Hecker M, Noirot P, Becher D, Fromion V. Goelzer A, et al. Among authors: mariadassou m. Metab Eng. 2015 Nov;32:232-243. doi: 10.1016/j.ymben.2015.10.003. Epub 2015 Oct 21. Metab Eng. 2015. PMID: 26498510
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii.
Loux V, Mariadassou M, Almeida S, Chiapello H, Hammani A, Buratti J, Gendrault A, Barbe V, Aury JM, Deutsch SM, Parayre S, Madec MN, Chuat V, Jan G, Peterlongo P, Azevedo V, Le Loir Y, Falentin H. Loux V, et al. Among authors: mariadassou m. BMC Genomics. 2015 Apr 15;16(1):296. doi: 10.1186/s12864-015-1467-7. BMC Genomics. 2015. PMID: 25886522 Free PMC article.
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