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BRD2 and BRD3 genes independently evolved RNA structures to control unproductive splicing.
NAR Genom Bioinform. 2024 Jan 15;6(1):lqad113. doi: 10.1093/nargab/lqad113. eCollection 2024 Mar.
NAR Genom Bioinform. 2024.
PMID: 38226395
Free PMC article.
Long-range RNA structures in the human transcriptome beyond evolutionarily conserved regions.
Margasyuk S, Zavileyskiy L, Cao C, Pervouchine D.
Margasyuk S, et al.
PeerJ. 2023 Nov 28;11:e16414. doi: 10.7717/peerj.16414. eCollection 2023.
PeerJ. 2023.
PMID: 38047033
Free PMC article.
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RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing.
Margasyuk S, Kalinina M, Petrova M, Skvortsov D, Cao C, Pervouchine DD.
Margasyuk S, et al.
RNA. 2023 Sep;29(9):1423-1436. doi: 10.1261/rna.079508.122. Epub 2023 Jun 9.
RNA. 2023.
PMID: 37295923
Free PMC article.
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Transcriptome sequencing suggests that pre-mRNA splicing counteracts widespread intronic cleavage and polyadenylation.
Vlasenok M, Margasyuk S, Pervouchine DD.
Vlasenok M, et al. Among authors: margasyuk s.
NAR Genom Bioinform. 2023 May 30;5(2):lqad051. doi: 10.1093/nargab/lqad051. eCollection 2023 Jun.
NAR Genom Bioinform. 2023.
PMID: 37260513
Free PMC article.
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RNAcontacts: A Pipeline for Predicting Contacts from RNA Proximity Ligation Assays.
Margasyuk SD, Vlasenok MA, Li G, Cao C, Pervouchine DD.
Margasyuk SD, et al.
Acta Naturae. 2023 Jan-Mar;15(1):51-57. doi: 10.32607/actanaturae.11893.
Acta Naturae. 2023.
PMID: 37153509
Free PMC article.
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Tissue-specific regulation of gene expression via unproductive splicing.
Mironov A, Petrova M, Margasyuk S, Vlasenok M, Mironov AA, Skvortsov D, Pervouchine DD.
Mironov A, et al. Among authors: margasyuk s.
Nucleic Acids Res. 2023 Apr 24;51(7):3055-3066. doi: 10.1093/nar/gkad161.
Nucleic Acids Res. 2023.
PMID: 36912101
Free PMC article.
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