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A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology.
Lutnick B, Manthey D, Becker JU, Ginley B, Moos K, Zuckerman JE, Rodrigues L, Gallan AJ, Barisoni L, Alpers CE, Wang XX, Myakala K, Jones BA, Levi M, Kopp JB, Yoshida T, Zee J, Han SS, Jain S, Rosenberg AZ, Jen KY, Sarder P; Kidney Precision Medicine Project. Lutnick B, et al. Among authors: manthey d. Commun Med (Lond). 2022 Aug 19;2:105. doi: 10.1038/s43856-022-00138-z. eCollection 2022. Commun Med (Lond). 2022. PMID: 35996627 Free PMC article.
A tool for federated training of segmentation models on whole slide images.
Lutnick B, Manthey D, Becker JU, Zuckerman JE, Rodrigues L, Jen KY, Sarder P. Lutnick B, et al. Among authors: manthey d. J Pathol Inform. 2022 May 21;13:100101. doi: 10.1016/j.jpi.2022.100101. eCollection 2022. J Pathol Inform. 2022. PMID: 35910077 Free PMC article.
User friendly, cloud based, whole slide image segmentation.
Lutnick B, Kammardi Shashiprakash A, Manthey D, Sarder P. Lutnick B, et al. Among authors: manthey d. Proc SPIE Int Soc Opt Eng. 2021 Feb;11603:116030J. doi: 10.1117/12.2581383. Epub 2021 Feb 15. Proc SPIE Int Soc Opt Eng. 2021. PMID: 34366542 Free PMC article.
PodoCount: A Robust, Fully Automated, Whole-Slide Podocyte Quantification Tool.
Santo BA, Govind D, Daneshpajouhnejad P, Yang X, Wang XX, Myakala K, Jones BA, Levi M, Kopp JB, Yoshida T, Niedernhofer LJ, Manthey D, Moon KC, Han SS, Zee J, Rosenberg AZ, Sarder P. Santo BA, et al. Among authors: manthey d. Kidney Int Rep. 2022 Jun 3;7(6):1377-1392. doi: 10.1016/j.ekir.2022.03.004. eCollection 2022 Jun. Kidney Int Rep. 2022. PMID: 35694561 Free PMC article.
PodoSighter: A Cloud-Based Tool for Label-Free Podocyte Detection in Kidney Whole-Slide Images.
Govind D, Becker JU, Miecznikowski J, Rosenberg AZ, Dang J, Tharaux PL, Yacoub R, Thaiss F, Hoyer PF, Manthey D, Lutnick B, Worral AM, Mohammad I, Walavalkar V, Tomaszewski JE, Jen KY, Sarder P. Govind D, et al. Among authors: manthey d. J Am Soc Nephrol. 2021 Nov;32(11):2795-2813. doi: 10.1681/ASN.2021050630. Epub 2021 Sep 3. J Am Soc Nephrol. 2021. PMID: 34479966 Free PMC article.
A Distributed System Improves Inter-Observer and AI Concordance in Annotating Interstitial Fibrosis and Tubular Atrophy.
Shashiprakash AK, Lutnick B, Ginley B, Govind D, Lucarelli N, Jen KY, Rosenberg AZ, Urisman A, Walavalkar V, Zuckerman JE, Delsante M, Bissonnette MLZ, Tomaszewski JE, Manthey D, Sarder P. Shashiprakash AK, et al. Among authors: manthey d. Proc SPIE Int Soc Opt Eng. 2021 Feb;11603:116030V. doi: 10.1117/12.2581789. Epub 2021 Feb 15. Proc SPIE Int Soc Opt Eng. 2021. PMID: 34366540 Free PMC article.
Structured crowdsourcing enables convolutional segmentation of histology images.
Amgad M, Elfandy H, Hussein H, Atteya LA, Elsebaie MAT, Abo Elnasr LS, Sakr RA, Salem HSE, Ismail AF, Saad AM, Ahmed J, Elsebaie MAT, Rahman M, Ruhban IA, Elgazar NM, Alagha Y, Osman MH, Alhusseiny AM, Khalaf MM, Younes AF, Abdulkarim A, Younes DM, Gadallah AM, Elkashash AM, Fala SY, Zaki BM, Beezley J, Chittajallu DR, Manthey D, Gutman DA, Cooper LAD. Amgad M, et al. Among authors: manthey d. Bioinformatics. 2019 Sep 15;35(18):3461-3467. doi: 10.1093/bioinformatics/btz083. Bioinformatics. 2019. PMID: 30726865 Free PMC article.
NuCLS: A scalable crowdsourcing approach and dataset for nucleus classification and segmentation in breast cancer.
Amgad M, Atteya LA, Hussein H, Mohammed KH, Hafiz E, Elsebaie MAT, Alhusseiny AM, AlMoslemany MA, Elmatboly AM, Pappalardo PA, Sakr RA, Mobadersany P, Rachid A, Saad AM, Alkashash AM, Ruhban IA, Alrefai A, Elgazar NM, Abdulkarim A, Farag AA, Etman A, Elsaeed AG, Alagha Y, Amer YA, Raslan AM, Nadim MK, Elsebaie MAT, Ayad A, Hanna LE, Gadallah A, Elkady M, Drumheller B, Jaye D, Manthey D, Gutman DA, Elfandy H, Cooper LAD. Amgad M, et al. Among authors: manthey d. Gigascience. 2022 May 17;11:giac037. doi: 10.1093/gigascience/giac037. Gigascience. 2022. PMID: 35579553 Free PMC article.
112 results