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Multi-ancestry polygenic mechanisms of type 2 diabetes.
Smith K, Deutsch AJ, McGrail C, Kim H, Hsu S, Huerta-Chagoya A, Mandla R, Schroeder PH, Westerman KE, Szczerbinski L, Majarian TD, Kaur V, Williamson A, Zaitlen N, Claussnitzer M, Florez JC, Manning AK, Mercader JM, Gaulton KJ, Udler MS. Smith K, et al. Among authors: manning ak. Nat Med. 2024 Apr;30(4):1065-1074. doi: 10.1038/s41591-024-02865-3. Epub 2024 Mar 5. Nat Med. 2024. PMID: 38443691
Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes.
Majithia AR, Flannick J, Shahinian P, Guo M, Bray MA, Fontanillas P, Gabriel SB; GoT2D Consortium; NHGRI JHS/FHS Allelic Spectrum Project; SIGMA T2D Consortium; T2D-GENES Consortium; Rosen ED, Altshuler D. Majithia AR, et al. Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):13127-32. doi: 10.1073/pnas.1410428111. Epub 2014 Aug 25. Proc Natl Acad Sci U S A. 2014. PMID: 25157153 Free PMC article.
Algorithms for the identification of prevalent diabetes in the All of Us Research Program validated using polygenic scores - a new resource for diabetes precision medicine.
Szczerbinski L, Mandla R, Schroeder P, Porneala BC, Li JH, Florez JC, Mercader JM, Manning AK, Udler MS. Szczerbinski L, et al. Among authors: manning ak. medRxiv [Preprint]. 2023 Sep 5:2023.09.05.23295061. doi: 10.1101/2023.09.05.23295061. medRxiv. 2023. PMID: 37732265 Free PMC article. Preprint.
Rare variant association analysis in 51,256 type 2 diabetes cases and 370,487 controls informs the spectrum of pathogenicity of monogenic diabetes genes.
Schroeder P, Mandla R, Huerta-Chagoya A, Alkanak A, Nagy D, Szczerbinski L, Madsen JGS, Cole JB, Porneala B, Westerman K, Li JH, Pollin TI, Florez JC, Gloyn AL, Cebola I, Manning A, Leong A, Udler M, Mercader JM. Schroeder P, et al. medRxiv [Preprint]. 2023 Sep 29:2023.09.28.23296244. doi: 10.1101/2023.09.28.23296244. medRxiv. 2023. PMID: 37808701 Free PMC article. Preprint.
Re-analysis and meta-analysis of summary statistics from gene-environment interaction studies.
Pham DT, Westerman KE, Pan C, Chen L, Srinivasan S, Isganaitis E, Vajravelu ME, Bacha F, Chernausek S, Gubitosi-Klug R, Divers J, Pihoker C, Marcovina SM, Manning AK, Chen H. Pham DT, et al. Among authors: manning ak. Bioinformatics. 2023 Dec 1;39(12):btad730. doi: 10.1093/bioinformatics/btad730. Bioinformatics. 2023. PMID: 38039147 Free PMC article.
Refinement of a published gene-physical activity interaction impacting HDL-cholesterol: role of sex and lipoprotein subfractions.
Westerman KE, Kilpeläinen TO, Sevilla-Gonzalez M, Connelly MA, Wood AC, Tsai MY, Taylor KD, Rich SS, Rotter JI, Otvos JD, Bentley AR, Mora S, Aschard H, Rao DC, Gu C, Chasman DI, Manning AK. Westerman KE, et al. Among authors: manning ak. medRxiv [Preprint]. 2024 Jan 24:2024.01.23.24301689. doi: 10.1101/2024.01.23.24301689. medRxiv. 2024. PMID: 38313294 Free PMC article. Preprint.
Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations.
Hou K, Gogarten S, Kim J, Hua X, Dias JA, Sun Q, Wang Y, Tan T; Polygenic Risk Methods in Diverse Populations (PRIMED) Consortium Methods Working Group; Atkinson EG, Martin A, Shortt J, Hirbo J, Li Y, Pasaniuc B, Zhang H. Hou K, et al. Bioinformatics. 2024 Mar 29;40(4):btae148. doi: 10.1093/bioinformatics/btae148. Bioinformatics. 2024. PMID: 38490256 Free PMC article.
117 results