Mannerström H - Search Results

1

Bayesian metabolic flux analysis reveals intracellular flux couplings.

Heinonen M, Osmala M, Mannerström H, Wallenius J, Kaski S, Rousu J, Lähdesmäki H. Heinonen M, et al. Among authors: mannerstrom h. Bioinformatics. 2019 Jul 15;35(14):i548-i557. doi: 10.1093/bioinformatics/btz315. Bioinformatics. 2019. PMID: 31510676 Free PMC article.

2

lgpr: an interpretable non-parametric method for inferring covariate effects from longitudinal data.

Timonen J, Mannerström H, Vehtari A, Lähdesmäki H. Timonen J, et al. Among authors: mannerstrom h. Bioinformatics. 2021 Jul 27;37(13):1860-1867. doi: 10.1093/bioinformatics/btab021. Bioinformatics. 2021. PMID: 33471072 Free PMC article.

3

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways.

Äijö T, Huang Y, Mannerström H, Chavez L, Tsagaratou A, Rao A, Lähdesmäki H. Äijö T, et al. Among authors: mannerstrom h. Genome Biol. 2016 Mar 14;17:49. doi: 10.1186/s13059-016-0911-6. Genome Biol. 2016. PMID: 26975309 Free PMC article.

4

A Probabilistic Framework for Molecular Network Structure Inference by Means of Mechanistic Modeling.

Timonen J, Mannerstrom H, Lahdesmaki H, Intosalmi J. Timonen J, et al. Among authors: mannerstrom h. IEEE/ACM Trans Comput Biol Bioinform. 2019 Nov-Dec;16(6):1843-1854. doi: 10.1109/TCBB.2018.2825327. Epub 2018 Apr 10. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29993837

5

PairGP: Gaussian process modeling of longitudinal data from paired multi-condition studies.

Vantini M, Mannerström H, Rautio S, Ahlfors H, Stockinger B, Lähdesmäki H. Vantini M, et al. Among authors: mannerstrom h. Comput Biol Med. 2022 Apr;143:105268. doi: 10.1016/j.compbiomed.2022.105268. Epub 2022 Jan 26. Comput Biol Med. 2022. PMID: 35131609 Free article.

6

Identification of global regulators of T-helper cell lineage specification.

Kanduri K, Tripathi S, Larjo A, Mannerström H, Ullah U, Lund R, Hawkins RD, Ren B, Lähdesmäki H, Lahesmaa R. Kanduri K, et al. Among authors: mannerstrom h. Genome Med. 2015 Nov 20;7:122. doi: 10.1186/s13073-015-0237-0. Genome Med. 2015. PMID: 26589177 Free PMC article.

7

Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter.

Smolander OP, Kandhavelu M, Mannerström H, Lihavainen E, Kalaichelvan S, Healy S, Yli-Harja O, Karp M, Ribeiro AS. Smolander OP, et al. Among authors: mannerstrom h. BMC Mol Biol. 2011 May 14;12:21. doi: 10.1186/1471-2199-12-21. BMC Mol Biol. 2011. PMID: 21569576 Free PMC article.

8

Effects of the promoter open complex formation on gene expression dynamics.

Ribeiro AS, Häkkinen A, Mannerström H, Lloyd-Price J, Yli-Harja O. Ribeiro AS, et al. Among authors: mannerstrom h. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan;81(1 Pt 1):011912. doi: 10.1103/PhysRevE.81.011912. Epub 2010 Jan 22. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20365404

9

In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.

Kandhavelu M, Mannerström H, Gupta A, Häkkinen A, Lloyd-Price J, Yli-Harja O, Ribeiro AS. Kandhavelu M, et al. Among authors: mannerstrom h. BMC Syst Biol. 2011 Sep 25;5:149. doi: 10.1186/1752-0509-5-149. BMC Syst Biol. 2011. PMID: 21943372 Free PMC article.

10

Inference of kinetic parameters of delayed stochastic models of gene expression using a markov chain approximation.

Mannerstrom H, Yli-Harja O, Ribeiro AS. Mannerstrom H, et al. EURASIP J Bioinform Syst Biol. 2011;2011(1):572876. doi: 10.1155/2011/572876. Epub 2010 Dec 29. EURASIP J Bioinform Syst Biol. 2011. PMID: 21234243 Free PMC article.

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