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Stingray epidermal microbiomes are species-specific with local adaptations.
Kerr EN, Papudeshi B, Haggerty M, Wild N, Goodman AZ, Lima LFO, Hesse RD, Skye A, Mallawaarachchi V, Johri S, Parker S, Dinsdale EA. Kerr EN, et al. Among authors: mallawaarachchi v. Front Microbiol. 2023 Mar 2;14:1031711. doi: 10.3389/fmicb.2023.1031711. eCollection 2023. Front Microbiol. 2023. PMID: 36937279 Free PMC article.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Fernanda Mora M, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: mallawaarachchi v. Microb Genom. 2023 Sep;9(9):001100. doi: 10.1099/mgen.0.001100. Microb Genom. 2023. PMID: 37665209 Free PMC article.
Plassembler: an automated bacterial plasmid assembly tool.
Bouras G, Sheppard AE, Mallawaarachchi V, Vreugde S. Bouras G, et al. Among authors: mallawaarachchi v. Bioinformatics. 2023 Jul 1;39(7):btad409. doi: 10.1093/bioinformatics/btad409. Bioinformatics. 2023. PMID: 37369026 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. bioRxiv [Preprint]. 2023 Sep 11:2023.04.04.535632. doi: 10.1101/2023.04.04.535632. bioRxiv. 2023. PMID: 37066369 Free PMC article. Updated. Preprint.
19 results