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Ten simple rules and a template for creating workflows-as-applications.
Roach MJ, Pierce-Ward NT, Suchecki R, Mallawaarachchi V, Papudeshi B, Handley SA, Brown CT, Watson-Haigh NS, Edwards RA. Roach MJ, et al. Among authors: mallawaarachchi v. PLoS Comput Biol. 2022 Dec 15;18(12):e1010705. doi: 10.1371/journal.pcbi.1010705. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520686 Free PMC article. No abstract available.
CH-Bin: A convex hull based approach for binning metagenomic contigs.
Chandrasiri S, Perera T, Dilhara A, Perera I, Mallawaarachchi V. Chandrasiri S, et al. Among authors: mallawaarachchi v. Comput Biol Chem. 2022 Oct;100:107734. doi: 10.1016/j.compbiolchem.2022.107734. Epub 2022 Jul 14. Comput Biol Chem. 2022. PMID: 35964419 Free article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
19 results